© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0279400.1
ACCCCAACTCAAAAGACCCATCGTATAATCTCCATCAAAGTTCTCTACGGACGATTCATCAGTTATTTTTTTTCCAGCAACAAATTTCCGCGCATTACATACTCAAAAAAGAATAAGCAACGTATACAGTAGGAAAGAAAGGATTTGCGAGTCCAGATCTCTATTACAAGCCTCCTACATTTCTACCATCACGAGGTGTACTCGAAAGGTTGTGGTGGCTGCGGCTCGTCGTCGACAGCCATGGCAGATGAGGCCTGTTGGCCTGTGGCAGCAGCGGCGCTACCAGTGGTCGCAGCCACAGTTGAGGGGGCATCGGTGAGTGCGAGTACCTCCGCCTCGGTTGGCTGCATGTCCTGGAGGAGGATGAATCCAGATGGAGCAGGTTTCACCGGGACATATCGGCTGCCCTCGATAAACTTGATGAACTTCTCTTGGGTAGGGATGACGCGTGCTGGGTTTGTGAGGATCTGGAAGGTTGGTTCGGGTTCAGGAGCCTTCTTCTCCGCCGCGTTATCAACCTGCATTGCATCGGCATCCTTCTCCTGAGTTTTGGTGGCCTTGCTTGAACTAGAGCCAGAAGCATCTTCGGTTGCTTTCTCCTGGTTAGCTTTGCTTTCTGCATCCTTCTTTGCCCTAGATTTCGCCTTGGCGTATGTTGACAAAATGGCTGTCGGCAGTTTGACAGCTGAAGTCGTAGTCTGTTGCGTTGTCGGTTTGGGATACTCAAAGAGGGATGGTTTAGCATGTGACAAGAACTCAAACTTCGGTACTTTAAGATCGGAGTTGAGTCCAATGAAGGCTGTTGGCGAGAAGGCCAAGCTAATAAAATACAGGAGAGGATACCAGTACCAGAACTGACTGAAAACAGCAAGGCCAACCACAGCAGTAAGCTTGTCGTGCTTGTTCCTTGAGAGAAGTTTGATTGTGACATTCCTGCCACCAGCATCTAGAATACCAGAAGCCAGTATGGCACCCATTTTGCTCATGGTGTCCTCATGTTTGTCAAGAATGATCTTTTCCAATTGACGCCTGAATGTTCCAACACGAGAATCAAAGGATTCATTAGTCTGAATCATGACCATCGCCATAGCAATGAGAGCTCCCTGGCGAACAAAGTCAACAACATCTGATGTGAGAGGCTCCAACAAGGAAATTGCATCACTTAATCCACTTCCCGCGCATGATATCCCAACAGCTAAAGCAGCACCATAACGGACATGTGGGTTGTATGATTCAGAGAGCAGGGACACAATTCTAGGAGTCTGCTCAGGTTCATTGTATAGAACAAATCCAAGAGCCATAACTGCAGTCCTCCGAACATCGTCACTGACGTCTGATACAGCAAAATGCAGCAGCTGGTGTATGGCTTTGTTATTTGCAGTTCCCCTGTAGGCTAGAGCCAATGCATACATGCCACCGTAACGTAATATGGGATCTTGATCCCTTGTCATTTGTTCAATCAGGGTGTCAGCTTCCTCTTCCCTGCCATAAACTGTCAACGCAATGCCAAGTGACAAACCCCTAATAATCTTTTCATGCTGTGTATCATGAGCATAAGCAAGCATCTCACTGGCCTTCTCACTGGCTGTCCCAACCATAAGCAAGCCCATTCCAATACCAGCTGCTTCACCAGCCACAGCACTGTCCGTGTAAAGAACATTTTTTATGTCCTCATATATCTCCTCATCTGCTGTTCCCAAAGCTGCAAGCCCAAGGCCCAAACAGGCTCCGTGCTGGATCACCTCAGCACTGGTATTGCGAAGGCTTTCACGAAGGAATTGTTTGATCCCTTCACCATGGTTAGCATGAATCAAACCCAGGGCATATAGGGCACCTCCTTCTGAGTATGGACTACCACCACCAACGGCACCACTTTGAGGTAGGTAGGGGGCCATCAAAGCTCGCCCTTGTTGAAGATGGCCTCTGTGAATGACACCTAGTCCAGCGGTTGCGCTGAATTTAGCCCAATTGGTTGCCCTGCTTAACCACTCCAGATTCTCTCTTAGGAAGGTGTCTACAGTTGTTCCAGCATGCATGATTGCATTGGTACATATTGTTGCACTGTGGCAAACACTGTTCCTCATTTCCACAGCCTGCTTTATTGTTTTCAAAATTAAAAGATCCGACCTATTGTGGCTATACAAAAATTGCAGTGTCAACTGGATAGATGTCTCCCCTGACAGTATTCCTTTTATTTTCGCAAGCCTATCAGCACGTGCTACCTCATTTGGATCTACTGTGTGAGAACTACCATTTGGTGTAGCTGTGTCATCTCTCATCTGAACATCCCCAGCTGGTTCTGTGCTGCCCGTACCCGCATTAGCAGCTTGATCATCCGGTAAAGCCGATCCACTATCAGGGTTAGACTCAGGAGTTTGTGAAGCCAGACGATTCCTCACATTCAAAAGGAAAGCTTGATTTTCATTTTCAACGAGATCAAAGGCAATTTGGTACGCAAGGAGAGCATCATCCTTGCTTCCAGAAAGCAGCTTGTCCAATATGTTTGCCACAGTTTCAGGCTCGCCCAAGAACATTAAGCATTGGCAAATACTCAGGTAATCTGGATGTGGCAATGTTTGGTATATCTTAACAAGACAGCGAAGAACCTCAAATCGATATTCACGGTGGTTAACATATTGATGGGAAAGGTTGATACAATACGAAAGAGCCCCATGAATATTGTCACATCGAACAATCGCCGACTCCAGTTTGTCAAGTCTCCTGCATTCAACAGCCATTCCCATGGCCTGCTGATATTTACCGTCAAGAATACACTTCTCCAGCATTCTCTCCACTATGGCCTCTAATCTGGGGTCCACATATTTCTTCCTCCTCGTGCGCCTTTAGGAGCTTTCGTCTTTAAACGGGCATACTCGTCCAATGCTTTTGCTAAAAGAGCATGAGCATAATCAGAATCCTCGGAAATGTCAAACAGAGGCCCAGCACCAAGTGCATAGGACAGTGCATCGTTTAGCTCCCCAAGGTAGTAAAATACCTTAGAAACAACAAGTGCAGCGAGCTGCCTTTGTTCAAAATCCTCGTCTTCATACAGGCTCTCAATGGTGGGGATGCTGGTGGAGATCTCCGGGTAGAAGAGGTGCACGACGGAGTTGAGGCTGGCGAGCGCGTGCAGCTTGAGCTCCTCCGCCGGCTCCTGCAGCATCGCGAGGATGCCGCTCGCGGAGCTCACCGTGGCCACCGCCGCCGCTGCCATGGCCGCCTCCGCCGCCGCCGCCGAAGAGGTGGGAAGTGACGAGGGTTTGGTTTTTTTTTCGGTTTTGGGTGTCGCGAGTTGGCTTCGAGACGAGGGCGACGATGCGAGAAGGGAATCAAGTGCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0279400.1 | 4 | 30801588 | C | A |
| Osa04LNT0279400.1 | 4 | 30802487 | A | G |
| Osa04LNT0279400.1 | 4 | 30799310 | A | G |
| Osa04LNT0279400.1 | 4 | 30799496 | T | A |
| Osa04LNT0279400.1 | 4 | 30801429 | A | G |
| Osa04LNT0279400.1 | 4 | 30801791 | C | A |
| Osa04LNT0279400.1 | 4 | 30804057 | T | G |
| Osa04LNT0279400.1 | 4 | 30804499 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0279400.1 | osa-miR5533 | Translation | 4.5 | 21.812 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR5800 | Translation | 5.0 | 12.469 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR395f | Cleavage | 5.0 | 10.475 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR396c-3p | Translation | 5.0 | 8.618 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR172d-5p | Cleavage | 5.0 | 18.264 | 1 | 20 |
| Osa04LNT0279400.1 | osa-miR396e-3p | Translation | 4.0 | 20.292 | 1 | 24 |
| Osa04LNT0279400.1 | osa-miR529b | Translation | 4.5 | 15.37 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR1426 | Cleavage | 4.0 | 6.61 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR1432-5p | Cleavage | 5.0 | 19.478 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR1853-3p | Cleavage | 4.0 | 18.256 | 1 | 22 |
| Osa04LNT0279400.1 | osa-miR1428e-5p | Translation | 4.0 | 20.656 | 1 | 22 |
| Osa04LNT0279400.1 | osa-miR1428f-5p | Translation | 4.0 | 20.656 | 1 | 22 |
| Osa04LNT0279400.1 | osa-miR1428g-5p | Translation | 4.0 | 20.656 | 1 | 22 |
| Osa04LNT0279400.1 | osa-miR2092-5p | Cleavage | 5.0 | 11.5 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR396f-3p | Translation | 4.5 | 20.292 | 1 | 24 |
| Osa04LNT0279400.1 | osa-miR5511 | Cleavage | 5.0 | 21.528 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR5519 | Cleavage | 4.5 | 21.177 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR5519 | Cleavage | 5.0 | 24.391 | 1 | 21 |
| Osa04LNT0279400.1 | osa-miR5524 | Translation | 5.0 | 20.074 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0279400.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0279400.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0279400.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0279400.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0279400.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0279400.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0279400.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0279400.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0279400.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)