© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0280800.1
CAGTCCTCGTGCTTCTAATGATGATATTAACAAAAGAATATTTACACAAAAGCAATTGCTACTTTGTTAGCCCTTCATCTGCGTGGTGTGTACTGTGAAAAGGGCACACCCTCTTGCGCATTGGAGGAGAAAAAGGGAAACAAAAGAACAAGGCCAAAGGGAAGGAAATTAAGCAAGCAAAGCGCACGAGGCACGCTCATGAACTCACACCACCTAGGTCAACCCAACAACACGGCTCGACCAAATTCCAGCGAGGAAGCGATGCCCAAACACCTGTAACACCATGTGATCCCGTGCGTGATGCACGGGCATACCAGACTGCTACTACTTCGTTCCAAAATATTGTACCTAGAATGTGATTTGACCGATCCTAAAGATAACGAATCTAGACAATCTCTATTTCGATTCATTATCTTAGGATGAGTTAAATCACATTCTAAATTACAGTATTTTAGAACGGATTGGAGGCAGTAGATGCCTTAGATCGTTCAATCACCTACTCCCTCTTCCTCCTACCCAAGTCAGCAAGTGATGAGACCGCCTTTGTATGAGCCGGGAATTTAGCTCCAAGCCTTCCTTGCCCTGCTTCTCGGTTATCTTCACCTGCCCTCGTCGATGATGGAGGTGAACAATGGCGAGGGAGTCAGCGGGCTGCCTTCCCCTGCGCCCTGGCTACTCGCCTGGCCGGCGCCGCCATCACCGGAGGACGGCGGCGTCGACGCCGAGCCGACCTGGCTGCTGCCCGTGTGGTGGCAGCTCCCGACCTTGATCTGCCACTCCGTGATGTAGCTCGGCTTTGCGGCATCTTCGGTTATGTCGGCGTCTCCGGTGAGCATGGAGACTACCTTCGACATTGGCGGCCGCTTGTGAGGGGAGCCCTGTGTGCAGAGGAGGGCGACGCGGATGACTCTGATCACCTCCTCGCTGTTGAATTCCGAGAGTTTTGGGTCCACGAAGTCGAGCGGGTGCCCGTTTTCATACAGCTCCCAGACCCTTTCAAATATGTAAGTTCTGTCTTCCTCAAGTGTATTCTGGTAGTTTGATTCACCAGCAACAGTCTCCAACGCGACCACGCCGAATGCAAACACATCAACTTTCTCAGTCATATGACCTCTCATGGCATACTCAGGTGCAAGGTAGCCAAATGTGCCAGCAACTTTTGTGCTGACGTGAGTTTTCTTGTTATCATAGAGCTTGGCAAGCCCAAAATCTGAAATCTTAGGGTTGAGACCGGCATCTAGCAAGACATTACTGGCCTTTATGTCCCTGTGCACGATGCGGACGGTAGAATCCTCGTGAAGATAAGCTATACCTCTTGCTAGGCCTAAGCATATCTCAAATCTTGTTGGCCAATCCAGGTTCAAGCTTCCCTTTCCAAACAGTGCTTGGTCAAGGCTTCCATTCTCCAGATACTCATAAACCAACAGCGGCGTATTGCTCTCAAGGCAGCAACCATACAATGTCACGAGGTTACAGTGTTGTACTCGAGATATAGTTTCGATTTCTGTAGCAAATTGCTTTTTCCCCTGATTAGATGACTGAGAGAGCTGCTTCACTGCCACCGCCCTTCCATCACTTAATCTACCCTTGTGAACCAATCCATATCCTCCTTCACCAAGTAGGTTACTAGAACTAAAATTTTCCGTAGCTGACCTTAGCTCATTATAACTGAAGACATTTGGTCTTCCAACTATGTTGTACAGCTCTTCTAGCTCCAATAATATCTTTCTCTTCTTCTGTCTCCATATAAAGTGTCCAGCAAGTGCAGCCAATGCAAAAACTGCAACACCAACCATAACTACAATGATCACAGCAATTTTGCTCCTGCTCTTGTTGTCTGCAGGGCTACGGACCGTTGGGATGAAGTTTGGAGTAGCGCTCAAAGCTGATATTGCAGGCCCATAGTAGCCTTGATGAGGAATGCAGCAAGTACCCTTGCCAGCCCAGAAGAGATGAATCTCAAGGAAATTTTTTGTCACAGGGACAACATACTGCTTCTTAACAACAGTGAAAGATTTCCCTCCTGCTGCCTTTCTTATGTCAAAGTTCTGCTCCTTACGCTCCCCCTGAATGTAGATGTCAAAAATCCTCCTCCCTCTGCTCCTCCAAGACTGCACATCAGGGAAATCCACCTCGGCAAATTGAAGTGTTACAGTGTAGTTCCCATTCTCGAGTCCAATGCCATAGTATCTCAAAGATGATGGTGACATCCTTGCTGTTTGGAACAGTCCAGAATCTAGTGTTTTATCGAACTGGCGTGAACTGTAGATTATGTAACTTCCATTGGGTGGATCCATGAATCTTCCAGTGGTGCTAACACCCCACGTAGGTGTGCCTGCCACATAGTATGATGCAGCACCAAGATTGGCGTTATCAGCCTGATACATGGCATTATCTGAGCCTGATATGGTTCTACTACCACCACAGTCCACCGCGAAAGAGGCAGACTTCGGAGAACCGAGAAAACAGGGGGTATTCCGCTGAAGACAATTCAATCCCCATGGCAGACCACTCATATCAGTGCCATCAATCACAAAGTCATTTGCCACCAAATTCAGTTGTAAATCTTTCTGGGCAGTCCAAGAAGGAAAGTTTCCTGAGAGGTGGTTGTATGAAAAATCTAAATTTGAAAGCAGAGGACTTTTCATGGCTGGCAGACTTCCTGAAAGGCTATTATTCCCAAGAAATAGAAAAGTAAGAGAAGGAAGATTCACGATTGACGGAGGAATTTGACCTGTGATATTGTTAAAACTCAAATCCAGTAGATTTAAACTTCCAAACTTGGAGAAGTCCACTGATGCAAGTGAATCAGAAATCCTGCTGTTTCTCAAGACAAGATCACCCAAAGATGTCATGCTTCCAATGAACGCCAGTGAAGAGCTTCCATTTACTATATCCCCTATTCTTAAGCTTCTCAACTTGACAAGATTATATAAGCTTCTAGGAATAGGACCTTGAAAAGAGTTCCCTTGGAGCCTCAGTTGGGTTAAGTTGGTCAAACTCCCAAGATAATCAGGTATTTGCCCAGTGAAATTATTATCCAATGCCCACCTGGATGCACAATGACAATGGTGTCCATAATTATTTGTTGAAATTTCATGAGAAACAATAAAATCCCAAACACTGCTTTGCGAAATTATAAGGTGGACAGGTTCGTAAGTTGTGATAAAGTCGTTGGTAGAGGACCACTGAAGTCGTTACTATCAATGTACAGCTGTTGAAGTTTTGTCAATTTACCCAGCTCATCGGGAAGTGATCCATTAAAATTATTTGAGCCCAATGCCAGCGATACAAGATTTGTAAGATTGCCAAGCTCCTTGGGGATAGGTCCAGACAACGCATTGATGCCCACAGTAATGTACTTGAGAGCAGTCAGTTCTCCGATGAACGCTGGTAATGGCCCGGTGAAATAATTCTTCCTGAAGTCCCTCCGCGATCTCGACGCAGCCGCACGTCCCAGCGCACCGCTGGCTCCGAGGCGCCATGGCGCTCGAACTCCGCAACGCCAGCAACGGTCTCCTCCAGGCCCACGAGCATCGGCACGCGGCCGGCGACGACGGCCGCCGGCCAGCCAAATCTCCGGCGATAGGGCGGCATTTCCGGTGAGGCGGCGCGTGGAAGCGGAGCGTAGGTGTGGGCCGAACGGGGTAGGTTGAAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0280800.1 | 4 | 31265374 | A | C |
| Osa04LNT0280800.1 | 4 | 31263556 | A | G |
| Osa04LNT0280800.1 | 4 | 31264248 | C | T |
| Osa04LNT0280800.1 | 4 | 31263968 | A | G |
| Osa04LNT0280800.1 | 4 | 31264009 | A | G |
| Osa04LNT0280800.1 | 4 | 31264667 | C | T |
| Osa04LNT0280800.1 | 4 | 31266259 | T | C |
| Osa04LNT0280800.1 | 4 | 31264187 | A | G |
| Osa04LNT0280800.1 | 4 | 31266804 | C | T |
| Osa04LNT0280800.1 | 4 | 31266888 | T | C |
| Osa04LNT0280800.1 | 4 | 31266889 | A | G |
| Osa04LNT0280800.1 | 4 | 31267121 | G | T |
| Osa04LNT0280800.1 | 4 | 31267995 | C | G |
| Osa04LNT0280800.1 | 4 | 31268122 | G | T |
| Osa04LNT0280800.1 | 4 | 31268322 | G | A |
| Osa04LNT0280800.1 | 4 | 31269521 | A | G |
| Osa04LNT0280800.1 | 4 | 31266869 | A | G |
| Osa04LNT0280800.1 | 4 | 31265163 | A | G |
| Osa04LNT0280800.1 | 4 | 31266860 | T | C |
| Osa04LNT0280800.1 | 4 | 31269816 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0280800.1 | osa-miR5788 | Cleavage | 4.5 | 18.449 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR5795 | Translation | 3.5 | 16.647 | 1 | 22 |
| Osa04LNT0280800.1 | osa-miR6256 | Translation | 4.5 | 11.298 | 1 | 22 |
| Osa04LNT0280800.1 | osa-miR156a | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156b-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156c-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156d | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156e | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156f-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156g-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156h-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156i | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR156j-5p | Cleavage | 4.0 | 14.155 | 1 | 20 |
| Osa04LNT0280800.1 | osa-miR164e | Cleavage | 5.0 | 20.597 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR535-5p | Cleavage | 5.0 | 18.388 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1428a-3p | Translation | 4.5 | 18.125 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1439 | Cleavage | 2.5 | 17.942 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1428b | Cleavage | 3.0 | 18.125 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1428c | Cleavage | 3.0 | 18.125 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1428d | Cleavage | 3.0 | 18.125 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1428e-3p | Cleavage | 3.0 | 18.125 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1858a | Translation | 4.5 | 16.147 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1858b | Translation | 4.5 | 16.147 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR1882a | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882b | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882c | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882d | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882e-5p | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882f | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882g | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR1882h | Cleavage | 4.0 | 14.109 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR2094-5p | Translation | 4.5 | 18.242 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR2101-3p | Cleavage | 5.0 | 17.656 | 1 | 22 |
| Osa04LNT0280800.1 | osa-miR2873a | Cleavage | 4.5 | 11.528 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR2873a | Translation | 5.0 | 15.186 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR2873a | Translation | 5.0 | 19.308 | 1 | 24 |
| Osa04LNT0280800.1 | osa-miR2920 | Translation | 5.0 | 10.143 | 1 | 23 |
| Osa04LNT0280800.1 | osa-miR2873b | Cleavage | 3.5 | 11.843 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR2873b | Cleavage | 4.5 | 13.895 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR5160 | Translation | 4.5 | 15.368 | 1 | 22 |
| Osa04LNT0280800.1 | osa-miR5492 | Translation | 5.0 | 6.276 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR5498 | Cleavage | 4.5 | 16.174 | 1 | 21 |
| Osa04LNT0280800.1 | osa-miR5506 | Cleavage | 5.0 | 13.361 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0280800.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0280800.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0280800.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0280800.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0280800.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0280800.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0280800.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0280800.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0280800.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0280800.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)