© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0281700.1
GTCACAAATTAAGAGATCGATTGCATTGATGAGCTCGGTACAGGTATACTCAGCCGTTTATAGAAGGAAGAAAAAAAAAGGCACAATCAACCTTTACGATCCAATTGAGGACCAGGCGTTCTTTTGATTATATATGTATACACAGGTCAGTTATGCAGCAAATACCAATGTTAGGTTCGTATTGGCAGATGCTTGCTTCAAAACTGAGAGTTGGAAATCTTTCCAGGCATTTATCGACCTGGATTCCCTGAACCACATCATCATATAGAGTCCTGTAGTGATGACTGATGAAATAAATCATTATCCCAATTTCTGTTTTGAGTTACGCAAACACACCAAGTCCTCCTAGCGTAACCGTTCAGTCAGTTGGTCAGTTGATTGCCATTGGGCTCTGGGAAATTAAAGAACCGTTTCAACTTCAGCAAACTGAAGTTTACGTCTATTTAAGTATGGAATGTCTTTCCCACTGAAATAGGCCAGACTTCTCAACATCACCAAGTGACAACACAGGAAAACCTGAAAGCCCAGCACTGAAGCTGTTAGAAAACATAACCAGGAGGCTTTGGCAGGCCTGCTCTTCTTCTAGGTGCTCTGCCTCATTGCGATGCATAGCAGGATCCTTCCAAGGTTGATAATAATGCCATCTCCATGCAGGATTAGCTTCAGCCGGACATTGTATCTGTGAGCACAGCATTTCGATTTGTCCATAATCGCCAATGAAGTTTCTGATAACTTGTTTATTGGATCTGTCAAGAAGCAACAAGCAAAGAGCAGCCACCACAGATGGCAAAAAATCTCGGTTCATTTTCAGATGTTTTTGCAGGTACAGTATAATTATAGCTAGTGCCTCATCTGCACTGTGACTGCCAACAGTTTCAACCTTTTCATCATATGTATAGTTCAAGAAAGATTCAAGAGATCCAAAATTGTTGGCATCCCTTGTAAGGTCTCCACACTTTTCATGAGAGATGCAGGAGATTTTCCCAAGAATTATGGAAGCCACTAACCAGCGCAGCATCTTAGAAAGTAGGCACTCGTTTTTTAGTGGCTCTTCATGTGGCATTTTCAGTACAGATCTTTGTTCATCACACAACCAGAAGATGTTAGAAGTTGCCCATGAAACAACAGTTGCTGTCATCGACTTATCCATTTCAGACAAAACTGGCAGAGGACCATTCATAAGAATGACATCAATGCCAAGTTGCATTGCAAGCTTAACTTCTATGCTTCTTGAGATGCCACCAATAGTTCGGCACAATTTATGTATGCCATGGAGGGATAAAGAGAAATGTGGTTGGTAAATCTTCCTTTTCATAGACAACCTCATCGTTGATGCAATCACATTTAGCACTGAAGTTAGCAATGGAACATTTCCTTTCAACAATTTCATATCTTCAACAAGGACATAAAGGTATTTAGATATTCTTGAGAGTTGCTCAAGGGCGGTTTCTTGGAGCCATTCTGCAATTAATCTTGATGATGTCAAATCATTCACTACCTCCAACGCTGACCCAATTACTGTAGAAGAATAGGAGTTTTTTACACTGTCCAGCCCTTCGACATGAGATGAGATTACAGAGGATAACCACAACAGAAGGCCAGAGTCTTTTGTTAAATGATGAGCCAGAACGGGAAGTTTTACACACTTCTTTAGCACCTGGAGGGTTAAAAGCTTTGTTTCAGAATCTGAAACAGCCGAAGAACCATAGGAAAGAGCAAGCTCTAAAACACCTCCTCTTTTGTATATCTTAGCATCATCTGCTAGGTTTGATCCAGCATATAACAACTGAAGCATCCACAAGCGGTCAGATTTGAAATGCACAGCATTACTCCTAAACAATGCTGGAAATAATGGAATGCTCTGAAGGTTGACAGAGGCAGAATGCATCAAAAACTTACTAATTGTAGCAAACTGAGTATGAGAGCTATCAAGTAGTGTCAAAGATGCTTCTGCGGCAAAAATAGCAATAACAGAAGGTATCCTCTGCCATTGTTCAGATATCCCATTCTGTAGATATGTCAAAAGAAGCTGGAGCTGCCATGTTTCCTTGCTTTTCTGAGAAGCCTCCAATGATTTTTTGAATGTTCCTAGAGATTCATAACCCAGCTTCCTTAAGTCTTCATCGGGAGATGATATGCTAACTAATGTTATTGCAAGTAGCCCTAGTCGGGAAAATTCAACAGGTTCAATATAGCCCATCAGAAGAGTATGGATTGAGAAGTGCAAGATAAACACAGGATCATAAATCCGAACCGCATCCATGCTTTGAGATGTTGCCTTGAAAATATCGCCAAAATTATCTTGCTGAAGCTGTTCCAGTGAAAAAATAGAAGCTCTTGAAGATCTCCTATAGCAAAATTGTAAGACAGTCATGACACAGAGCTTAGAATCAATGGGTATGTTCTCGCGGAATAGCGACCTTCGCCTATCACTAATTTCCGCATTTTCCATTTTGTGCGTATCAGATGCTGAAAATTCTAGCTTCAGTTCTTCTCTAAATTTCACAGCTGCCTTTCCCCAAAGATGATCCACATCAGTAATGGCTTTGCACTCAGATGACTCTATCTCATTCATAAGGTGAAGTATCTCTAGATCTGTTTCACTAAGAGTTGCACCATAAACAGATAAAAGCAAGAAACCAAGCTCCCTTGATTCATCCAATAGGCTACTGTTATGTTGCCTACTCTTAATATCATACAGTACCCTGAGTAACCTGATGATTTCTACTTTCTTCCTTTCTGGAATGCAGTCTTGGAACTTGTTTTCTTTTGCAAAAGCAGAATCAACTGATTTTAAAATACTTGGTGCTGGCTGAAGCAGGCCCCCAGTGGGATTACAAGCAGATGGGCACTCGGAAACTCCACTGCAGGTTATTGTCGACACAAAATGGGAGTGACCCAGTATGAGTTCAAGAATTTCATCAGCAGGAAACTTCCCTTCAGATAATACAACAATTATGCATCGGATTGCTTTTATTACAACAGGATCACTGAATCTATGTAAGAGGGATGATCTGATCAATTGGTTGAGGAAAGGTATTGGCTTCAACTGGTTCAGATGTGACTGAACCTCCGAAGACAACTCAACAATGTTCTTGAGGATTGCATACTCCAAACAACTGACGACATTTTGTTCCTCAGGAGAGGAAAGTAAGATGCCATCACTATGAGGGAAATTCCTGAATATTTTATCCAACGTTCTGACCAATATGCTTATAAAACTCAGCTTTGCATTGTTGACTCGCTTGGACTCCTTCTCTGGGGCTATTTCATTGTTCAACGATCCTCTAGGAGGAGATAACAACATCCTAATCAGTGATATCTTTGCAAATAACTCATTAGTAAGCTTCATAATACCGTTGCATGAAACAGGAGTAACAAAACTGATGTCAGAATCTAAGAGCTCAGATGATTGTGGGCAAATTGAAGCAATTATCTTTAATCGTTGCTTCCGAGGTATCTCTTTCGAATAGAAATAATAGCATAGCATAGTTATTGACTTCCCCAAGAGAGTGTCACCGAAATAATTCATTATATCTTCAACTGATGTGTGTCTAAAGTCACTAAAATCTTCCTCAAAAATACTTCTAGTAACAAAACTTTTCCAACATGGAAAGCCATTATCACTCAAAAGAATTTCACGATAGAAGACTGGAACTGGCTCAAGGAAGTCAACACACTGTCTATTGCCACCACTATGATGCTCTATGTATGATAAGGCAGCAGGCAACAAAAGTATAAAACTATCCTCATGAGTCCATGAAGCATTAGAATCGGAACCCACGACTTGCATAACAGAAGTGTCTTTTTTCAGAATATCCGTGAGCAATTTTCCAAAAAGGCGCATGTGCATAGGATTTGCTCCCAAAAGCAACTGTATAGCTTTAGCTTTAACCTTAGATGTGGGAAACATGCAGTGATGAAGAATGTCAATGGGAGTGTTGGCCACCATTGTCGATAACATCATGTGTAATGCAATATAATCAGTGTTCCTAACTGCAGATATTTCTGTATGGTGGATACGAATTAACATCTTCAGCAAGCAAAGATCAGCAAATTCAAGATTCAATTTAGTAGCAAAATGAAGAATGATATTATAAACTTGCTGAATGGTGGCAATATCACAATTATGAATCTCCAAGCCCCATAATCGACAGGGTCCTGATCTCTGATCAATTTGTTGTAAATAGTCATATAGCATTTCGAAGGCAATATCGGCAGTGTATAGACAACAAAATGCAGCGGGAGCATATGCAGGTGAACTGGAACTGAAACCTTCAAACGTTGAGAACATCCAGTTTGCAAGTTCCAGGAGTCTGACAGGAGATACAAATTTTGCCAGTGTACGGAACATGTAAAAATTTGGCAAAAACAGTCCAAAGTTCCTTTTCTCCATGCAGAGTTCAAACTTCTCCTTGAACAACAGTAGTATTCTCTCAAGCAGTAGCTTCGGAGGGCCAAACAGTGACTCAAGGGATTGATCATCATTATTAGAGTAGTTAGCTCCAAAACTACCAGCTAATAATACAAGGCCATATAGATTACTCAGAAGATTTAAAACAAAACTATCAGCAAGGTGTAGCTTTTCCTTAGAAAAACTAGCAAAATCTTCTTTCACATATTCCACACTCCCATCTGCTAAGTCTTGAAAATTGGATAAAGAGCATGACAAAGACAGGCCAATTATAGGATGCTGGACAACAGACTCAACAATGCCATTAAGACATTCAACTGGATAGAATGCCACTGAAGATTTTGAGTTAGCAGTATCAGCAGTCAAAACTCGAATGCGCTCGAAGATGCTGTCAATAAGAGAGAAGCAAACACCACACAACTGTGCAAGAATATCTGAACACTTCACAGTGTATGATGACAGCAAGTGATGGCTCCAAAATAAGACGACTCTCAAGAAAATTGTCAACTCACTTAATGGGCTTTCAGAAATCTTAGCTTGAAGAAGATGTACAAGCTCATCTTGAAGTAATGGATGTGCCTTTGTGATTTCATCTGGTGCTGAAAATGCGAGGCTTAATACTGATGGTAAGAGTGCACAAAATGGAGTCACATTTAGAAAAGTACTTATCACAGCTGATTCTGAACAAGTTGAGTGCTTTCCCCATTTGTCCTCAACAATATTGACACTATCAACATCAAGATTTCCCTTGATCTGCCTGAGACTGCTGAAGAACATGTCTGGGCAATAACTAGCAACCTTAGCTAGATAATCATGTTGCAGAAAAAGAACTGATGACAAGAACGGCAAATTAGAAGGAAAATGTGTCTTCAGAACATGAAGAAGCTTCGGAAAGCTACTGATAACATCATCTGGTGGTGCACATATGACTGAATATAAGAATGATGTTGCTACATCATCTGGTAAATTGGTGGGTTGCTGATTTGACATTTCCTCAATTGTTCTAGTTACAGAACACAAAGAATTTCCATAAACTTCAGACGAATGCTCAAGGGTGCTGAACAAACTAGAACTCTTTTGGTCAGAAATACTCCTCAAGATATGCAACAAATACATCAGTGGCCTCCATTCAGCAAAACAAATCCTAGAATTTATTTCCTCTGATGAAAATTTACCGAGTCTCTCATTTAGGATGGTGCCTACAAGATCAGGCAATAAAAGCACATCTACCTGTGACTGCATAATAAGGTAGACTGTGTTGCACACATATAATGAAATTGTAGACTTCTCATGTAATTTCACACTTGCAGACTCCGAGTCTAGTAGCCTAAGACATTTCTGGAGAACACAAACAATCAAAGGACTGAAAGATGGAGAATAGCCTACAAATCACAAGAAAAGTTTGAGCATAGGAATAAGTTGGTTCTCATTAGGTAATAATTCAAAAGCGTGGCATACATGGATAAGAACCTGCCAGAAGACTCAGTGTATTAAATTAAAGTAAAATAATAGATGCAACAAAGTACCACATTTATAATAAAGAAGTTATAAGGAGACCAGAAGTTTAGAACAAAGTGTAAAACTCCAAGTCTCCGACTGAACAAAAGGAGTGTGGTTCAATTAGATATCCATGTGCATGGCAACTAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0281700.1 | 4 | 31789262 | T | A |
| Osa04LNT0281700.1 | 4 | 31790222 | G | A |
| Osa04LNT0281700.1 | 4 | 31792441 | T | C |
| Osa04LNT0281700.1 | 4 | 31789012 | C | G |
| Osa04LNT0281700.1 | 4 | 31789239 | A | C |
| Osa04LNT0281700.1 | 4 | 31789550 | A | T |
| Osa04LNT0281700.1 | 4 | 31789664 | A | G |
| Osa04LNT0281700.1 | 4 | 31790266 | G | A |
| Osa04LNT0281700.1 | 4 | 31790467 | A | G |
| Osa04LNT0281700.1 | 4 | 31791138 | A | G |
| Osa04LNT0281700.1 | 4 | 31791145 | A | T |
| Osa04LNT0281700.1 | 4 | 31791195 | A | G |
| Osa04LNT0281700.1 | 4 | 31791531 | A | G |
| Osa04LNT0281700.1 | 4 | 31792078 | C | A |
| Osa04LNT0281700.1 | 4 | 31789357 | A | G |
| Osa04LNT0281700.1 | 4 | 31792285 | A | G |
| Osa04LNT0281700.1 | 4 | 31792327 | T | C |
| Osa04LNT0281700.1 | 4 | 31792499 | T | A |
| Osa04LNT0281700.1 | 4 | 31792676 | A | C |
| Osa04LNT0281700.1 | 4 | 31793040 | A | T |
| Osa04LNT0281700.1 | 4 | 31793139 | C | T |
| Osa04LNT0281700.1 | 4 | 31793461 | G | A |
| Osa04LNT0281700.1 | 4 | 31793703 | A | C |
| Osa04LNT0281700.1 | 4 | 31793715 | G | A |
| Osa04LNT0281700.1 | 4 | 31793799 | G | A |
| Osa04LNT0281700.1 | 4 | 31793897 | A | G |
| Osa04LNT0281700.1 | 4 | 31794031 | A | T |
| Osa04LNT0281700.1 | 4 | 31794081 | C | T |
| Osa04LNT0281700.1 | 4 | 31794141 | G | T |
| Osa04LNT0281700.1 | 4 | 31794304 | G | T |
| Osa04LNT0281700.1 | 4 | 31794711 | A | C |
| Osa04LNT0281700.1 | 4 | 31794792 | T | C |
| Osa04LNT0281700.1 | 4 | 31794816 | A | G |
| Osa04LNT0281700.1 | 4 | 31794832 | G | A |
| Osa04LNT0281700.1 | 4 | 31795124 | A | G |
| Osa04LNT0281700.1 | 4 | 31795403 | G | A |
| Osa04LNT0281700.1 | 4 | 31795630 | T | A |
| Osa04LNT0281700.1 | 4 | 31795646 | A | G |
| Osa04LNT0281700.1 | 4 | 31795973 | T | C |
| Osa04LNT0281700.1 | 4 | 31796054 | T | C |
| Osa04LNT0281700.1 | 4 | 31796133 | T | C |
| Osa04LNT0281700.1 | 4 | 31796288 | C | A |
| Osa04LNT0281700.1 | 4 | 31796651 | T | C |
| Osa04LNT0281700.1 | 4 | 31796790 | G | C |
| Osa04LNT0281700.1 | 4 | 31796836 | A | T |
| Osa04LNT0281700.1 | 4 | 31797020 | C | G |
| Osa04LNT0281700.1 | 4 | 31797133 | T | C |
| Osa04LNT0281700.1 | 4 | 31792210 | C | A |
| Osa04LNT0281700.1 | 4 | 31788622 | T | C |
| Osa04LNT0281700.1 | 4 | 31792129 | A | G |
| Osa04LNT0281700.1 | 4 | 31794699 | G | A |
| Osa04LNT0281700.1 | 4 | 31789699 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0281700.1 | osa-miR5525 | Cleavage | 5.0 | 17.338 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR5525 | Translation | 5.0 | 24.151 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR812q | Translation | 4.5 | 11.406 | 1 | 24 |
| Osa04LNT0281700.1 | osa-miR5825 | Cleavage | 5.0 | 22.483 | 1 | 24 |
| Osa04LNT0281700.1 | osa-miR6247 | Cleavage | 4.5 | 20.652 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR5079b | Cleavage | 4.5 | 6.908 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR395f | Cleavage | 5.0 | 11.462 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR167e-3p | Translation | 4.0 | 16.022 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR167i-3p | Translation | 4.0 | 16.022 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR172b | Cleavage | 5.0 | 16.904 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR172b | Cleavage | 4.0 | 16.944 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR408-5p | Cleavage | 5.0 | 20.874 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR395w | Cleavage | 5.0 | 12.255 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR395w | Cleavage | 4.5 | 15.095 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR1426 | Cleavage | 4.5 | 16.944 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR444d.3 | Translation | 4.0 | 12.331 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR1435 | Translation | 4.0 | 15.275 | 1 | 20 |
| Osa04LNT0281700.1 | osa-miR1435 | Translation | 4.5 | 13.84 | 1 | 20 |
| Osa04LNT0281700.1 | osa-miR1854-5p | Cleavage | 5.0 | 16.834 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR1428e-3p | Translation | 5.0 | 18.414 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR1860-5p | Translation | 4.0 | 14.77 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR2866 | Translation | 4.5 | 14.228 | 1 | 20 |
| Osa04LNT0281700.1 | osa-miR2878-5p | Translation | 5.0 | 17.099 | 1 | 24 |
| Osa04LNT0281700.1 | osa-miR2878-3p | Cleavage | 4.0 | 11.131 | 1 | 24 |
| Osa04LNT0281700.1 | osa-miR812o-5p | Cleavage | 5.0 | 18.486 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR812o-5p | Translation | 4.0 | 19.415 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR5079a | Cleavage | 4.5 | 6.908 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR5081 | Cleavage | 4.0 | 14.086 | 1 | 22 |
| Osa04LNT0281700.1 | osa-miR5083 | Cleavage | 4.5 | 19.136 | 1 | 20 |
| Osa04LNT0281700.1 | osa-miR5338 | Cleavage | 5.0 | 19.339 | 1 | 21 |
| Osa04LNT0281700.1 | osa-miR1870-5p | Cleavage | 3.5 | 17.855 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0281700.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281700.1 | 4 | nan | Morphological trait | Root | RG476 | RG214 |
| Osa04LNT0281700.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0281700.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0281700.1 | 4 | qSC-4 | Morphological trait | Panicle/flower | RG776 | RG476 |
| Osa04LNT0281700.1 | 4 | phc4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281700.1 | 4 | phs4.1 | Resistance or Tolerance | Drought tolerance | RG476 | RG214 |
| Osa04LNT0281700.1 | 4 | Ctb1 | Resistance or Tolerance | Cold tolerance | nan | nan |
| Osa04LNT0281700.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0281700.1 | 4 | qSN-4b | Resistance or Tolerance | Drought tolerance | RM255 | RM349 |
| Osa04LNT0281700.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0281700.1 | 4 | nan | Physiological trait | Source activity | RG143 | RG329 |
| Osa04LNT0281700.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Osa04LNT0281700.1 | 4 | nan | Morphological trait | Root | RM3276 | RM3335 |
| Osa04LNT0281700.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)