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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0292400.2

GAGCATCTCTCCAAATTGATTTCCAAGTAGAATTGTGTTACATCCCAAAAATATAAGTTGTTGTTTGAGACAACAGTGTTAGTATTGATATCAGACTATAGCAGTTAAGTCTAGTGGCAGTAACTGAAAAAGGGGCACAATGGCTGTATGCCCAGGCATCTTCAGAGACTCTGCAGTATTCTCCTGCAGTAGAAGTCACTGACATCTGGGCTCTTGGTAAGTGTGGCCCACATGTCAGTCGCAGTACTGCAGAGGATCTCATTCCCATCTTCAGTTATGCTGTCCAAACTTTCAAAAGCGTCTCATCAAACTTGGGGGCATTGCAAACCATCTGTGCTACTACCAGTTCCGAGCTCTTTCCGTCTTCTCGCGTTCGTGCATATGTCCAAGCAGGGCTCCTTTAGGGCTTTGTCGGTGTCAAGAGGTGGAGGTGACACCCCAAAGTTGAACTGGCAGCTATAGTCTTCAAAGTTTGGTTCCATATACAAATCAACACCCATGTGATCCTTGAAGAATGTCTGAGTTGGCAGTTTGCATGTGTTGATACAAACACCAAGGCATTTGCTCTCTTCCAAATATTTGCACTTCTCAACAAATACCTGACAGTTTCCATCACGCAATGTCCGTGAACTGTAAAATCTCACTGAGTGAAGGATAAACAAAAAAAACAGTAGGAATATATTGGTACCCCGCTTGATAATGATTTTCCATTGGATAATGTTATGGAATTTAACAAACATGGCCCCATCAGCCATTGGCATGAAAGTGCTGTTGCTCTAGCAACCATCATGGAAGCCAATTGACCATTAGCAATTGGTGCTAAAAGAGCTTTGAAGAGAACAAGCAAGAGAGGGGGAAACAGTGATCGGAGTACTCGGACAGCTGATTGCTCTGTCTCCAACGCACTCTTCCCCTTGATCATGAGGCGGTTGGCAACTTCAATCAGTCCATTGTAGCCAGGCTTTTCAGAATCCCATCCAACCTCCTCCACCATCTTGGCACGGAAGAAGGCGAGGAGGAAGTCGTCGGCGAAGGAGGGCTCGTACTCGCGGCCACCCTCCCCCGACGGCGACGCCGCATCCGCCGACGGCGAGGAGCAGCGGAGCAAGGAGGTAGTAGGCCGGCGGCGGAGCCCCCGAGAAGAGGAGGAGGCGACAGGGAGGAGGGCGCGGAGGAGGCAGGGAGGAGACGGCGGCGCCATGGCCATGGGCAAGTGCAGCGGCAGCCGGCGCGCGAGACGGACAGAGGCTGAGGCAAATCGG

Coding Potentia
Explanation CPC Score
noncoding -1.10539
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0292400.2 5 1831335 C T
Osa05LNT0292400.2 5 1831723 C T
Osa05LNT0292400.2 5 1831726 A G
Osa05LNT0292400.2 5 1831780 A G
Osa05LNT0292400.2 5 1831972 T C
Osa05LNT0292400.2 5 1832532 T A
Osa05LNT0292400.2 5 1832883 T C
Osa05LNT0292400.2 5 1833026 G A
Osa05LNT0292400.2 5 1832604 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0292400.2 osa-miR319a-5p Translation 4.0 22.619 1 21
Osa05LNT0292400.2 osa-miR1850.2 Cleavage 4.5 17.95 1 21
Osa05LNT0292400.2 osa-miR2870 Cleavage 4.0 6.703 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0292400.2 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus