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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0293900.1

ATCAAATACTGTAGAACATAGGAGGTTCAAACATGTAAGGAAAAAAAAACTAGCAACATATTGTTCCTATCATCCCTCCGATTCTTCATATGGATAACTGAATTTCATACTTTTCCATCATAACCTTTGGTAGCACCAACATAATTACATAATTGATCACCATTAGTTGGAGGTTCAGCATAGTGTCACCACCCACATTCCATTTCATCAAGCACCATGTTCAGCAGGATTCAAGAACGATGGCGGCCAAGGCATCGCATACGGGTAAATCGACGCCGACGAGCAATCTTCATC

Coding Potentia
Explanation CPC Score
noncoding -1.47816
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0293900.1 5 nan Morphological trait Root RZ556 RG313
Osa05LNT0293900.1 5 Ph5-1 Morphological trait Dwarf RG313 RZ556
Osa05LNT0293900.1 5 CORN5 Physiological trait Source activity C597 R1838
Osa05LNT0293900.1 5 nan Resistance or Tolerance Drought tolerance RG313 RZ556
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus