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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0294700.1

AATGCAAAAGTATATGAATTAAACAAATTGCATAATACGAAACTGTATCACAGGTGAAACTCCGAATATCCCAACTTGATTTCAAATATGTACGTGATGGAACTCAATAAACCAAATCAAAATGTCCACCCCGGGTTATTTTCTGTTTCTTCTTCTCAGATTTGCTTCGAGGCTTACGGCACGACCCGGGCTTAATTTCATACAATGGGTTTTCCATCTTCTTACAAGCAACTTCAGATTTCAAATGTTAAGTATTAACTTAAATTCCCTTCATGAGGGTCTACATCCTTGGGGTGTGCATTTGCCGATACGATGAGCCCTCGGGTGATCGATTTTCCGGAGATGATCTTCCAACACCAATCCATTGCCCAAATAGTCTCCTTGGAGCAGGCGCGGGTTCTGATGTACCATGAGATTGTTGTGAACTCCACCAGTTTGTCTCACAGTCCACTGGCATTAGTGGGTATGGTGCGAAGCGATCCCGTTCCCAGGCATAGAATCGGTTTCCTCCTGCATCATCAGTCTCCATCGAGTTATGGCCAGATGAACCTGGTGGGAAAAGGCAAAATGCCGGGTTCTCTGGTAGAGGGGGCGGCGGTGCAGTTCGCATGCCTCCTGATCTATGAGCCCCAGCAAATAAGCTGGATGATGAACTCTGCTGGTACTGTTCACTAATGCTGCCGTGCGCCCTCATGAATTGAGGTACCATAGGAGGAACATTAGGAGCTCTAGATCTAGAACCAGATCCATTACTGAAGTATGATGGAGAAATAGATGATCCTCGACGTTGGGTATCACCATCAACTCTTGCAGCCCTCGTTGTTCCAAAAGGGACTCCTTGCTGCTCGGCCACCCCATTATTGTTGTTGGGTTGAGGATAGGAATTGGGAACATGCGCCCAATGGTTATGATGAAAATCAGCAGGTTGCACTGATTGCAAGGGCCTACCATCTGAAGGCCCAGCCAAGGGGTGCCAGGGATCATGATATGCAGGACCATCCATAGTTCTCTCAGGAACATGAGAGCTTGATGATGACGCCAATGATGGAAGAGGATGCAAGTATGCCACATATGGGCATGGATGAGCTGCCCCAGGTGCAGAAGATACAGCAGCTACATGCTCCGTAAACATATGTTGTCCCATGAAGTCATGAAAAGTAACTGGGGGTGATGATTCTCCTTCCCTGGCAAAAGAGGGGAACATTAAGTGAGGAACATAATATTACATAGCACCAATTTCAAACAATGAAACTCTGAAACTTTTAATATAGCGTGCTATAGATTTTGCACAGACAATAGTTGGTGTTAAGAGAAGGGTGCAGCAAAAGATAGAACTTAAAGAATTGATATGTTCACTGACTGCAATCGGTATCGGGAAAGACAATATGGCTTAATGGTATCATCATTAATGCTGTCACCAGTAGTCTGATCAGCACTTTGGTCAAATGGTATACTGACATATTGGTATATACAAGCAATAGACAGTGGCTTGTCAGAAGATCCATGCAAAGTAGAGTTAGAGTCTCATGGAAAGAGAACTAGCACGGAGATTGTCAAAAACCAAATGCATCATGATAGGACTAAACCTAAGAAAAAATGTATATTGTTCCGCACTTCATCACCGAGAATTGAAAGGCCATTCACCTTATATTCATCCCTCCCTAAAACAGATTGTTGATATTACAGGTCCTAGAGTTAACTCATTTGCTTATTAATTTTTCAAAACACTAGCTAAATACCCATATGCTTTGCTATGGATAGATAAAAGAATATTTTCATAATATTGCCTAAAATAAGCAATAACATATTTTTCATGAAATGTATATGTTACCCGTCTTTTTGTTATAGGGAATACCCACCTTAATTTAATTGTATATGTGGCTATCCACCTAGATTTAGTTGTTATGTAACATTAAAAGTTCAAGGGGTAATATGTAAAATCTACAAAAGGAGTGGGTGGGGTGGCAGATTCAATGCCACCACCATTGGAATCTTTTTGAGGAGTATAGAGTATAGATAGCATCGCTAATGGACCAACATAAATACAACATCTAGTTATAGTACCTCATAAGACCAATTTTCACTACCCGCAAATTCAATGGTGTTTTATATTATTACTATACTTGAAAGATCTTATAGTGCTGAGCTAGAAATAGAACTGGACAATTGGAAAGGTGAAATAAAACGATAAACCACAATTTCAAGCGAAGACTGCAGAACATACTCAAAGAAGGATGGAAGTTGAGCCAAACGACCAAATGGGCACCAGTGAAACCGAAAGGGCATCTCCGAGTAACTAACATCATAAAGGTCTTCATCATGAGCCCACTCATCCATATTAACATCTTGTGTGGGTCGGGAACCATTTGCATAGAGCCAGTTCCCCTTTTCAATTTTGCGGCAGTTGGGGCATTGCATAACGCCTTTGGCATTAAATGCTGATCCAATGCAATCGAGGTGGAACTCGTGGCCACACTGCAGCCTCGCCGTGGACCTCTCCCCGCCGGCGGCGACAACCGCGTCGAGGCAGATCGAGCACGACACCGCCGCGGCCGCGGCCGCCGCCTTCTCCTCCTCCTTCCCGCCCA

Coding Potentia
Explanation CPC Score
noncoding -1.0396
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0294700.1 5 3190956 A C
Osa05LNT0294700.1 5 3190649 T C
Osa05LNT0294700.1 5 3191805 T C
Osa05LNT0294700.1 5 3191925 T C
Osa05LNT0294700.1 5 3192986 T C
Osa05LNT0294700.1 5 3194041 A C
Osa05LNT0294700.1 5 3194401 A T
Osa05LNT0294700.1 5 3194548 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0294700.1 osa-miR5540 Cleavage 4.5 13.245 1 21
Osa05LNT0294700.1 osa-miR5819 Cleavage 4.0 20.718 1 21
Osa05LNT0294700.1 osa-miR814b Translation 4.5 18.955 1 22
Osa05LNT0294700.1 osa-miR2877 Cleavage 4.5 23.084 1 24
Osa05LNT0294700.1 osa-miR814a Translation 4.5 18.955 1 22
Osa05LNT0294700.1 osa-miR814c Translation 4.5 18.955 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0294700.1 5 CORN5 Physiological trait Source activity C597 R1838
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus