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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0296300.1

TTCAACGCTGCGTGCTCTCGCCACTCTTGCCGCTGAGGTAGCACTTGCTTGAACTTATTGATGCTCCTCGGCCGTGCACGGAGAGGGAGCAGCAACATGGGCTGCATGCGCGTGCGTCGCCACTGTTGCCACTGATGCTCTCCTGGTGCTTGTCGCGAAAATGAAGTTGGACATCTGCTACTCCTGGTACTTATGAAGCTAAAAGCTAAGTCACACACGCGTCTTGCTTAGATGCTATGCAACACGAATGTGTTTATACTTCTTAGTTCTGTGGGATGGTTTGCTTCGTCCCACTCCTTCAATCAGAAGTATTGCAAGCTGCTATTGTCATGCTATGGAGCCGGATCCAATCCCAGTCATCGTCTTAGGTAGATTTTGCCACCAGTGTATAGGAAGAAGGCAATTCCATTCACTGGAGAGGAAAAATAAGGTGAAAGGTAGGGCTGTTGCAATCCATTGTTTCATCTTTTTTCGCTTTGGTTTATTCGAGTGTTTCACCCCTTTTGATTGAGATGTTGCACATGATGTGTACTATGTTTTCCCGATGTTGCACATAGCAATGTCTTCGTGTTTCGGTCAGCCTTTTATAATGTTACGACTTCTTGAAACATTTTTTTATCATGCAC

Coding Potentia
Explanation CPC Score
noncoding -1.07454
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0296300.1 5 4828663 G T
Osa05LNT0296300.1 5 4828713 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0296300.1 osa-miR395t Cleavage 4.5 17.434 1 21
Osa05LNT0296300.1 osa-miR395c Cleavage 4.5 17.434 1 21
Osa05LNT0296300.1 osa-miR395a Cleavage 4.5 17.434 1 21
Osa05LNT0296300.1 osa-miR408-5p Cleavage 5.0 20.78 1 21
Osa05LNT0296300.1 osa-miR5826 Cleavage 3.5 14.76 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa05LNT0296300.1 5 4828513 Grain-Width(mm) 11.47711182 .