Transcript

Sequence

>Osa05LNT0296500.1

GATCAAATCAACCTCATTGGATTAATTCCTGAACTCCAGATTGCTCTAGTTAACATAAATTTGTCAGTGAAAAATTGCTTACAAAGCGTCTACAGAAGAAAGTACACGCCAGTTAGCCACTTCTCTCTACAATCATCCCCCATGAGTATGCAATAGCTGATATTGCTGATAAGGAGTTATCCTAATGAAGAACAATCCTTTGGTTTCCCTTTTTGCATTCCAGCAAATAGACGAACAAAAGAATCAGTATAAGAATTTGGTCACAAGGATCTGCAACAATGTCTTGCAGTTCAGTCAGCCCAGACAAGCACAGCTATTCAATCGTTTCTGTGTACACATAATCAGCAAAACAGAAAGGGTAACAATAGTTGCTGCTGTAAATATGACTGCCAGAAAAGCAGAAGCAGCAAGCCCAGGCCGCTCTCGAGGATCGCGGTTGTAGTACTTGCAGTAATAAAGAAGAGCTGCAATGTACCAGATCAAGGGGCACAAGAAACCTAAAAGAAAACAGCACCAACCAATTCCACAACCAAAGAAGGGAAGTCGTCTCTCAAACATTGCCAATCTTGGATTTTCTTCATCTGCAAGTAGTGTGTACCTGCCAAGGCAGGCCTGGCACTGGCAAAATTCATCTGAGTTTCCTCCCCTCATAAAATCTATATTATAGTTGTTTGGCAAAGGAACCACCTAGAACCTTGGAGCTTCTCAACATTTCCAGGTAACTCCTAGTTGTAATGGCTTAATGACGACTACGGTCATATGAATTAGTCATCAAAGCAAGCAGATGGCGGAATCGAATCTGCTGTGGGGGGAGAAGAAGCCCATGAAAGAGACGGGATTCGCGGGGCGGTGTATGCTTCGTCGTAGCTTTGCGGGTTGGGTGGTCGAGAGGGAGTGGAGAGGAGAGGATGCGGCGGGCGAGCGAGCGAGAGGCTTCGGTGAAAGCTGAGCTCCCCTCTGCTCCTCGCCGCCGTTGTTTTTCTTCCTTTTTCTTTTTCTTTTTCTTTTTGTTTTTTTGGTTTTGGTATTT

Coding Potentia

Explanation	CPC Score
noncoding	-1.00111

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0296500.1	5	4887602	A	G
Osa05LNT0296500.1	5	4888313	T	C
Osa05LNT0296500.1	5	4888896	A	T
Osa05LNT0296500.1	5	4889273	A	G
Osa05LNT0296500.1	5	4889793	C	A
Osa05LNT0296500.1	5	4890040	A	G
Osa05LNT0296500.1	5	4887394	A	T

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0296500.1	osa-miR166h-5p	Translation	4.5	15.142	1	21
Osa05LNT0296500.1	osa-miR5525	Cleavage	4.5	22.261	1	22
Osa05LNT0296500.1	osa-miR2095-5p	Cleavage	5.0	14.163	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus
Osa05LNT0296500.1	5	4887490	Grain-Width(mm)	8.764054298	-
Osa05LNT0296500.1	5	4887953	Grain-Width(mm)	8.824450493	-
Osa05LNT0296500.1	5	4888256	Grain-Width(mm)	8.482351303	-
Osa05LNT0296500.1	5	4888509	Grain-Width(mm)	8.761666298	-
Osa05LNT0296500.1	5	4889169	Grain-Width(mm)	8.630133629	-
Osa05LNT0296500.1	5	4889273	Grain-Width(mm)	11.54573631	-
Osa05LNT0296500.1	5	4889459	Grain-Width(mm)	8.639455795	-
Osa05LNT0296500.1	5	4889781	Grain-Width(mm)	8.955798149	-
Osa05LNT0296500.1	5	4889782	Grain-Width(mm)	9.311559677	-
Osa05LNT0296500.1	5	4889822	Grain-Width(mm)	9.882052422	-
Osa05LNT0296500.1	5	4889824	Grain-Width(mm)	10.23819065	-
Osa05LNT0296500.1	5	4889882	Grain-Width(mm)	10.05617142	-
Osa05LNT0296500.1	5	4889975	Grain-Width(mm)	9.452236176	-
Osa05LNT0296500.1	5	4889981	Grain-Width(mm)	9.30080986	-