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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0297000.1

CAAACGTTGAACGTGAATAGTGTAAAACTGCACTTATTTTGAGACGGAGGAAGTAGCTAGCCAGCCAGCAATGGCGTCTCCTCCGGCCGGTGAGCAATGCAAGCTTGTTGACGTAGTACACATCGGATTGGAAAGCTTGAAGGTGCGGGCTCCCGCCGCCGGGCCGAGGAGGTCGCTCCACTGGTCACCGATGTTACCGACAATGGCATAGCCATCGCTCACCAGCTTATGCCGCTCACCGCTCTTGAACGCCTCGATGGAGAGACCCCCCGTCGGCTGAAGCACCAGCTTCTCCCACCCGGAGTAGCCCTGTTGGGAAAGGTTGCGGATGGTGACGGCCCTCTGGTTCTCGGTGCGGACTGTCAGGAACACCGGTTTAATGCCGAGCTCGAGCAGCCGTCGGTAAAGTCGTAGCGTCCCTGCTAGCGCCGGTGCGGTCCCCTGCTCCACGTATTGGAGGAAGCTCCTATTGTCGTACGGCTGGGCTCAGTTTGTCGTGTCAGTTCACATGCTGAGCGCGAGGAAAAACTCCTACCACGAAGGATTGCAGCACGGCGAGCTCTAGCAGCTGATGCAGACGGCATAAACCAATACGGCCAAGCAAGTATACCCAGTGCTTGAACGAACGGATCGCAGAGAGAACAGAGGAGCTATCACTAATGCAGAGAGGAACA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.893768
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0297000.1 5 5455704 A G
Osa05LNT0297000.1 5 5456083 T C
Osa05LNT0297000.1 5 5456621 C A
Osa05LNT0297000.1 5 5457059 T C
Osa05LNT0297000.1 5 5458430 C A
Osa05LNT0297000.1 5 5457009 T A
Osa05LNT0297000.1 5 5457754 A C
Osa05LNT0297000.1 5 5456812 C T
Osa05LNT0297000.1 5 5456876 A G
Osa05LNT0297000.1 5 5457035 T C
Osa05LNT0297000.1 5 5456706 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0297000.1 5 An7-glum Morphological trait Panicle/flower nan nan
Osa05LNT0297000.1 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0297000.1 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa05LNT0297000.1 5 5455649 Grain-Width(mm) 9.835263252 -
Osa05LNT0297000.1 5 5455690 Grain-Width(mm) 8.392711639 -
Osa05LNT0297000.1 5 5455710 Grain-Width(mm) 8.93239975 -
Osa05LNT0297000.1 5 5455739 Grain-Width(mm) 8.980119705 -
Osa05LNT0297000.1 5 5455757 Grain-Width(mm) 8.967010498 -
Osa05LNT0297000.1 5 5455916 Grain-Width(mm) 8.156420708 -
Osa05LNT0297000.1 5 5456085 Grain-Width(mm) 8.526796341 -
Osa05LNT0297000.1 5 5456506 Grain-Width(mm) 8.57910347 -
Osa05LNT0297000.1 5 5456997 Grain-Width(mm) 8.795213699 -
Osa05LNT0297000.1 5 5457124 Grain-Width(mm) 8.699109077 -
Osa05LNT0297000.1 5 5457181 Grain-Width(mm) 10.26379013 -
Osa05LNT0297000.1 5 5458063 Grain-Width(mm) 8.413221359 -
Osa05LNT0297000.1 5 5458115 Grain-Width(mm) 8.434041023 -
Osa05LNT0297000.1 5 5458430 Grain-Width(mm) 12.52247238 -
Osa05LNT0297000.1 5 5455690 Grain-length(mm) 8.850824356 -
Osa05LNT0297000.1 5 5455710 Grain-length(mm) 9.437941551 -
Osa05LNT0297000.1 5 5455739 Grain-length(mm) 9.695827484 -
Osa05LNT0297000.1 5 5455757 Grain-length(mm) 8.943081856 -
Osa05LNT0297000.1 5 5455877 Grain-length(mm) 8.234336853 -
Osa05LNT0297000.1 5 5455916 Grain-length(mm) 8.676633835 -
Osa05LNT0297000.1 5 5456085 Grain-length(mm) 8.543474197 -
Osa05LNT0297000.1 5 5456506 Grain-length(mm) 8.286585808 -
Osa05LNT0297000.1 5 5457124 Grain-length(mm) 8.018571854 -
Osa05LNT0297000.1 5 5457687 Grain-length(mm) 8.987502098 -
Osa05LNT0297000.1 5 5458063 Grain-length(mm) 8.725068092 -
Osa05LNT0297000.1 5 5458115 Grain-length(mm) 9.183861732 -