>Osa05LNT0298000.2

ACTTGGAACAGATAAAAGTCACCTCAAGTGTTTATTATAAAAAATAAGATTAGTCAGCACAAAATTTTAGTTCTACTTGATGGAAGGCTGCTTACTGCCTAAAGAAGGCAGTTTAAATAAGAAAGCCAACAAATAAGTTTAGATTGCATACATCATTGCGAAGAACATTACAAGTAGCAGCCTGACCTGAGTTTCTCGAGACTCTTGTCTTTGAATCTACGACTATTTCTCTTCGTCTGACTGAGAAGGCCCATTGATGGCATCAGCAAAATACTCAACTATGTCATCATCCGGGGATTCAAAAATATCAGAGTCTGAAGGCAGGAATGGGTTGCCTGAATAGTTTTCAAGGGCTGCCAGGTCTCCCAGATTTGTCAAATCTGCTGATAAATCAGAAAGACTGAAATCCCAGATCTGCTGCCCCAAGGAAGAGCTATCACCACCATTTGGTCCTATTTGCAGAGGTCCTCCATTCCCTAAATCATCTCCAAAGGTGGCATTTACAGTAGATGCATCCACATCCATCCCTGATATATCAGGAGTGAAAGAAACATGATTGCTTGACATTGCAGATGATGGACTCACAGCCATCTCTGATGACATGGCTCCAGCATGTGCAGTTCCAGGAACTTCATTCTCTGTCATGCCATTTCCTGAGCTCATGCGAATCGGATTATAACCACCTGGTGCAGGAATTCCATTTACCACATGGCAACCAGGTGGACCACAAGATATCGAATTAACATGAGGCTGAACAGGAGCAGGTATTCCAGGTTGTTGGAGTACTGGATATCCCATAGGCAAATTGTTAACAGGCATAGGACGAATACCGTTCTGTGTTGGGGTCAACGGAACCTGCTGTGGTACTGGGTACTTCATAAGATGGTATTGGTGCTCCAATAAGTGGTTAAACAAGTTAATCTGTTTTTTCAATTTCAACCTTATGTAGTAAGCCCGAAAGAACTCAGAATTTTCTTCTTCGAGTTTCTGCCATACTAAAGTAGTGAAACCAGGTTCAATTCTTGCACGAGTAGAAAGAGTCCTAACAACTTCTCCTCTATTCATATATAGCTGTAGACAGCGTTCTATTAAATTCTGGACAAGTTCAATATCTTCACGAGAAACCCTTTTATTATCATTACTTGCAGCGGATAAGGAATCAGAATCCCCTAAAGGTGCATCAGTATTTGGCTGTTCACCCTTGATTTCATCATCACCTTGCACCAATGGATGCACCTTTGCCTTGCTCTCAACATCCTCATGAGCACTTGGTATCTTGAACGGTTGCTCTTATATTTACCAAGTGACTCTACTGACTAATACAGAGTTAACAGGCCGGTTACTAGAGATGTTCTTTATTTTGCCTTTCATAGACATTCTTACACCTCTCCAGTCTTCATTGAAGTCCATCAACTACACCATCCAAGTTCTCCTTACTAGAATTGTGCAGCTGCTACATTTCACACTGGGGACCTCACAGTGCATGGCACTAGGCTACTGGAGGCTATCTTTGCCAAATCGATCATTGCGGTAGATTCATCATGTTCAAAACTGATTAGAAATCAGTTGCATGGCCAACACTGTTCTTGGAGCCAATAGTTGGCAAGCTCCGACTTGTTGTTCCTGGAGGCTATCTTTGCCAAATCGATCATTGCGGTAGATTCATCATGTTCAAAACTGATTAGAAATCAGTTGCATGGCCAACACTGTTCTTGGAGCCAATAGTTGGCAAGCTCCGACTTGTTGTTCCTCAAAGTCGAAGGGGGAGAAGATTACAAGGGACATGATTTTCATTTTACAGTTCAGTACAAACAAATTCTCAAAAAAAAAAGAGACTGGAAAAAATATATTGCTCTTGTCTAAGAGTTGCATAAAAATTAAATTACCATATTAGCCTGGATGGTAAATCTTCTAGCATTTTACACTCCAAAAGTCATCTAAGTACATTGCATATAGATTCTAAGAAGTAAAATCCAATCTTCCGAGTTGGCAAGCTATCTATTTCCGAATTAATTTATATGAAAGGTTCTCTCACAGTGTGACTGACATCAGCACTTTAAACAAAAGACAGTGCATCGAATTTATTTTTTTTTCAAGAAAGATTCTTACAGTACGAGGTACTACGACATCAGCACTCCAAACAAAAAGAAACACAGCGCAACAAACAAGCTCACCTGGGAACCCTCCTTCATTGCGGCTCAAGCCCCCACGTGTTCGTCAGATTAACACTTCTCCAGGATGGATGCGGCCGAAGCAGCAGCTGGACGAACGACGGCGCACCTGCTCGCTCGCCGGGATGGATGGGGACGCGCAGGCGGCGGGCGAGCTCACGAGGAGTCGACGACGAGGTGGGAATGGACGGGGAAAAATATCCTCGGCAGCCGGCACCGCACCAGGATTTCTCCTC

Explanation	CPC Score
noncoding	-1.02336

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0298000.2	5	6957690	A	T
Osa05LNT0298000.2	5	6958148	C	T
Osa05LNT0298000.2	5	6958569	A	G
Osa05LNT0298000.2	5	6959249	C	T
Osa05LNT0298000.2	5	6959534	T	A
Osa05LNT0298000.2	5	6959952	G	T
Osa05LNT0298000.2	5	6959979	C	A
Osa05LNT0298000.2	5	6960391	T	C
Osa05LNT0298000.2	5	6961494	G	A
Osa05LNT0298000.2	5	6962604	A	C
Osa05LNT0298000.2	5	6963317	A	G
Osa05LNT0298000.2	5	6958684	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0298000.2	osa-miR5530	Cleavage	5.0	12.143	1	21
Osa05LNT0298000.2	osa-miR166l-5p	Cleavage	5.0	7.736	1	21
Osa05LNT0298000.2	osa-miR417	Cleavage	4.0	9.644	1	21
Osa05LNT0298000.2	osa-miR1863a	Cleavage	4.5	21.616	1	24
Osa05LNT0298000.2	osa-miR1863b	Cleavage	4.5	21.616	1	24
Osa05LNT0298000.2	osa-miR5507	Translation	4.5	12.089	1	21
Osa05LNT0298000.2	osa-miR418	Cleavage	3.0	21.176	1	21
Osa05LNT0298000.2	osa-miR1850.2	Translation	4.5	9.763	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0298000.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0298000.2	5	An7-glum	Morphological trait	Panicle/flower	nan	nan
Osa05LNT0298000.2	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0298000.2	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus