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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0298700.1

TAATCGAAAATGTAATAGTAACTACGAACAATTTTGATAGTTCAGTGTTAGATAGTTACAGTGTTACACCCTTTTCCTGATGGAACTTTGTTAGGCAGCCACAATATAATCTAGAATAAACAACAGGAGGGATAATTATAAAGGTAGTACTGGGCAGAAAAAAATGCACATATATATATATATATATATATGTATGTATTATTAGAAAAAAAATGGCATAGATATAGATACATAAGAAATAAGTGAATTACACCAGCTGGCGCAGTGGCACATCCGGAAAAAAACATGAAAGAATGAGGGAAATAAAGCAAAGAATAAAGCTAGGTCGTCACTTATTTATTCCAGAAATGGCCAATGGCCATTTCCTAGTGCTCCGACCTTCAGCAAAATAATCTCATCAGTAGCTAAATCGTGCAGCAAGCAAGATGCCCTCGATCTCCATGGATCTCCATCAT

Coding Potentia
Explanation CPC Score
noncoding -1.29233
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0298700.1 5 7685756 G A
Osa05LNT0298700.1 5 7690804 T A
Osa05LNT0298700.1 5 7685875 T G
Osa05LNT0298700.1 5 7691553 C T
Osa05LNT0298700.1 5 7685493 C A
Osa05LNT0298700.1 5 7685917 T G
Osa05LNT0298700.1 5 7686151 G T
Osa05LNT0298700.1 5 7686558 C T
Osa05LNT0298700.1 5 7687182 T C
Osa05LNT0298700.1 5 7687183 G A
Osa05LNT0298700.1 5 7687586 T A
Osa05LNT0298700.1 5 7687911 A T
Osa05LNT0298700.1 5 7687990 T A
Osa05LNT0298700.1 5 7688260 C T
Osa05LNT0298700.1 5 7688289 C T
Osa05LNT0298700.1 5 7688313 T C
Osa05LNT0298700.1 5 7688384 A G
Osa05LNT0298700.1 5 7689017 T C
Osa05LNT0298700.1 5 7689459 A G
Osa05LNT0298700.1 5 7690007 T C
Osa05LNT0298700.1 5 7690288 G A
Osa05LNT0298700.1 5 7690366 A G
Osa05LNT0298700.1 5 7690372 A G
Osa05LNT0298700.1 5 7690397 T C
Osa05LNT0298700.1 5 7692479 C T
Osa05LNT0298700.1 5 7686926 G A
Osa05LNT0298700.1 5 7691681 A G
Osa05LNT0298700.1 5 7691763 A G
Osa05LNT0298700.1 5 7692414 A G
Osa05LNT0298700.1 5 7692437 C A
Osa05LNT0298700.1 5 7685790 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0298700.1 osa-miR5160 Translation 4.5 11.085 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0298700.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0298700.1 5 An7-glum Morphological trait Panicle/flower nan nan
Osa05LNT0298700.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0298700.1 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0298700.1 5 nt5.1 Morphological trait Culm/leaf RM169 RM249
Osa05LNT0298700.1 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus