>Osa05LNT0300100.1

GGTGAGCAGAACAAACAGAGGAGTGTATTCGTTGCGGTCTCAGTCCAGACTTTCAGAGGGGTGTATTCCTTGCGGTCTCAATCTAGACTTCAGAGGGGTGTATTCCTCAGTCTCAGTCCAGACTTCAGATTTATGGATGGCAGAAATGTTACTGCTTGTTTCCTCGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTGAATGCTGGGAAACTACTTCGAGTAGTCCGATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACACTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTATTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTCTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCACTTACTTCAATTAATGGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCACTTACTATGGTGAAATGATGGATTTTACAGGCGTAAAAA

Explanation	CPC Score
noncoding	-1.14578

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0300100.1	5	9294750	C	G
Osa05LNT0300100.1	5	9295028	A	T
Osa05LNT0300100.1	5	9295548	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0300100.1	osa-miR160d-3p	Cleavage	5.0	15.13	1	21
Osa05LNT0300100.1	osa-miR1320-3p	Cleavage	4.0	13.9	1	21
Osa05LNT0300100.1	osa-miR2873a	Cleavage	4.5	24.086	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0300100.1	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0300100.1	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0300100.1	5	qTHJ-5	Morphological trait	Seed	RM289	RM249
Osa05LNT0300100.1	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0300100.1	5	nt5.1	Morphological trait	Culm/leaf	RM169	RM249
Osa05LNT0300100.1	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus