\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0307000.1

AGATCAAAACTCAAGTTTCATTATCTCATCATATATCCCAAACTACTCCTGAAAAAAAAAACACTGCAAGGGTAGATGATATCAACAGTAATAATGTGCAAAAGCTCCATCTAATGACAATCACGATTATGCCTCCATCAGTAACTGAGAGCCTTCCTCTCTAATCACACCCCAGAAAGCCTAACTGAGGGTCTTCGTCTCTAATCCGACTAAATGAAAAAAAACACTGTAAGAATCACACCCCAGAAAGCCTAACTGACAGTCTTCGTCTCTAATCCGACTAAATGAAAAAAAAAAACACTGTCAGCTGTAAGGGTAGATGATATCAACAGTAATGTGCAAATGCTCCATCTAATGACAATCACAATTATGCCTCCATCAGTGACTGAGTCTTCATCTGAGAAAGCCTAACTGAGGGTCTTCGTCTCTAATCACGGCGCAGAAAGCATCCCTCGATCCACGTAACGGAGTGACCAACGATCAGCCCGAGACCCATCATGACGTAGCAAGCCGCGTCCAGGAACCTGCCGCTGTCGCCGCCGCGCACGGCGGCGAGGTAGATGACGTAGAGCCCCAGCAGCGCCACGGCCATGATGGCGGCTCGCCCCATGTTCTCCTCGCTCCTGGTGTACCGGGACGGGATGCGCGCGGCGGCCTCGTCGTCGTCGGCGGCGCACGCCGTCATCGCCAACCCCAGGATCGGCCCCATGAGCAGCGCGCCGGCCAGGGCGATGGCGCACAGGGCCACATCGCCCTTGCTCTCGCACCAGGGGAAGATCTCGGCGGCGAACACGGCCACCATCGCGACGGCGGCGATGATGCAGAACCATTGCGGGAGAAGCCACATCAGACTACGATCGAATCCGGCGAGAAAAAAAAAACTGAGGAAATCAACACGGCTTACCCTAATCGCGAGGAGCCATGGGGGCGTCGGGTTGCACGCGGCTGCGACCGGAGGCGGCCGGCCTTCCTCGAGCAAGCAGAACCGGAGATCGGCCGCCGCCGCCGGAGTATTCCCCATGCCGCCGCGGCCAGGGGAGGGATCGAGAGCGCGTCGGCGGCGGCGAGTGTGCGGCGAGATCGGAGGAATTTTTTTCGTTTTTAGATTTTTTTTAATATTTACAGAAATAATCTATCGACCAAAAAAATTACAGAAATAGCCCCTGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.712024
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0307000.1 5 17483754 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0307000.1 DTM_#DNAt_MULE_japo_Os0177 Chr5 - 17483703 17488485 81
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0307000.1 osa-miR1874-3p Cleavage 4.0 11.275 1 24
Osa05LNT0307000.1 osa-miR2863b Translation 3.0 13.653 1 21
Osa05LNT0307000.1 osa-miR2863b Translation 3.0 11.264 1 21
Osa05LNT0307000.1 osa-miR2931 Cleavage 4.5 18.682 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0307000.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0307000.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus