>Osa05LNT0308500.4

AAGCAGATTTGCGAATTCAAATAATAAGAAGGACCAAGTTCATAGCAAGATCCTAGATTTGGTTTTACTTCTTATAAAACACGCCATTCACGAATTCAGCACCATATGTGTAGTATTCATACGGCTAGTTAGCACACATATAGATGGCTTCATCGTCAACTAAATCCCAGCTATCATCCAAATCAATACTGTCATGGAAGGAAGCATCATCAATCTCTTCATCACCACTGAAAACTGAATTTGATTCTGCAGCAGATGACCAAGTACTCTTGAATGTTGCTGGTTTCTCTGAGCTGGCCAAGCTAGATGAAGGAAGCGGCAGCGACTCATCAGCATTAGCCCTTTGCTGGAACTGTGTAATGGTGTCTGAAGCAGATGACCAATTCTTGAAAGTTGCTGGTTTCTCTGAGCTGGCTAAGCTAGATGATTGCAGCATCTCATCAGCATCAGCCTTTTGTTGGAACTGCGCAATGCTGTCTGATGATTTCACTGAGCTAGATAAGATCAATGAAGGTAGTTGCAGTAACTCATCAACAGGTAAATGCACATCAAGTACTCCCAAAAGTTGAGCGATGTTATCTCCTGATTTGAGCGAACTGGATAAGCTTGATGAAGCTAGTTGCAACACCTCATCAACAGGAAGTAGCGGTTCATCAACTCTATATTGGGATTGTGCAGACATGACTGAGCTAGATAACCTTGGTAAAATCAGTTTCAGCTGCTCACACTCGTCAACAGGAAGCAGCGATTCATCAACAGAAATTTGTGGCTCATCAACTCTACAATGGGCTTGCGCAGTGCTATCTGTTGATTTGAATGAGCTGGACAATCTAGGTGAAGCTAGTTGCAATGAATCATCAACAGAATGCTGTGGGTCATCAACTCTGCACTGGAGCTGTGCAATGTTATCAGCTGAGTTGACTGAGGAGGACATGCTTGATAGCAGGGGTTCAGGAAGTTGCTTATCAACCCTGAGTTGAAGTTGTGAAATTTTATCGAAGATTCCCAGCATTTCCCCCTGCAATGCATCCACAATTTGGCCTCGGTCCATTAGTAACTCCCTCAGCTTTGCATTCTCCCGCACTTGCTGTTCCAGCATCTTGGATCTTTCCTTTGTAGCATCAAGTATGAGTTCTTGTTCATTCAACATTTTCTCAGCCAATGTTTCCCTTTCAACCTTCTTCTTCTCAGCTGCTACAGTCTCCACTTCAGCTTCAGCAAATCTGTTTTGAAGAGTATAGCGCATCTCGTCAATAATTAAGGCACAGTTGTTCCTTTCTTCAGAAATGTTAGACAACCGAGCTTGAAGCCCATGTGCTTCTGATGCTAGAATAGATTGCTCAGCGAAAACCTCCCCTGCAACCTACATATTCCATTAAGCAGTCCTATTCAGTCCTATTGTTTCAGTTGGTAAGACAAAGAAAAGTATGAAAATAAAACTCCCAGTGTTATATGTACAACTTTGTTGTTCTCTTCTGTTGAGAGCATTGTCATCTCTTTTAACTCCTCCACCTTCACAAAAATATCATTGCCAGCTTGAGTTGCTTCCAACACAGCTTGTTTTGTTTTTTCTTCTTTTAACTTTATGTCCTCTAGCATTTGGTTTATCGCTGTTACGTTTGACATCAAAGTAACCTTCTTGTCAATTTCATCAGCAATTGCATTGTCAAGCAACTCAAGTCTAACAGGGTAGCTTGACTGTATGTTCATAGCAGGTAATCCATCGTCATGGGTTACCAAATCATCATCAAAAGCTGAAGTTCCAGGTTTTGAATTCAGATCAATAGCAACCAAACAATCAGAATTTTCTTCCATAAGTCTATCCTCCTCCTCGTCATCTTCATCTTCCTCCTCATCATCTTCATCTTCCTCCTCCTCATCATCATCTTCATCTTCCTCCTCCTCTTCTTCCTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTGCTCAGCTGTGTATTTGTTCGCTAAGTAAGACTGCACTGAATCTGCATCATTATCCACCGAAGCAGGCCTTTTCATATGAGCACCTTCGTTTGCATGTGCATCATTGTTGTCCGGGATACTTGGAAGGACATTATGGATAATATAATCCGCAGCACCATCTATATCATTCTTATATTCCATGCAAACTTCTACCAGTGTTAAGAAATTCAACTGCGGGAACACCTCGAGGAGGGCGTCCAGGAGATCATCCCCCGTGCTCACCTTCCCCTCCCCCTGCAACCACAACAACAAGCCAGCGGCACGTCACGATCAC

Explanation	CPC Score
noncoding (weak)	-0.418923

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0308500.4	5	19219353	A	C
Osa05LNT0308500.4	5	19218530	T	C
Osa05LNT0308500.4	5	19219345	G	T
Osa05LNT0308500.4	5	19220345	A	G
Osa05LNT0308500.4	5	19220365	A	G
Osa05LNT0308500.4	5	19217537	A	T
Osa05LNT0308500.4	5	19220958	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0308500.4	osa-miR5830	Cleavage	5.0	22.891	1	24
Osa05LNT0308500.4	osa-miR5830	Cleavage	5.0	24.013	1	24
Osa05LNT0308500.4	osa-miR6254	Cleavage	5.0	18.372	1	21
Osa05LNT0308500.4	osa-miR156l-5p	Cleavage	5.0	17.953	1	21
Osa05LNT0308500.4	osa-miR1858a	Translation	4.0	0.086	1	21
Osa05LNT0308500.4	osa-miR1858a	Translation	4.0	3.805	1	21
Osa05LNT0308500.4	osa-miR1858b	Translation	4.0	0.086	1	21
Osa05LNT0308500.4	osa-miR1858b	Translation	4.0	3.805	1	21
Osa05LNT0308500.4	osa-miR2095-3p	Cleavage	5.0	12.987	1	20
Osa05LNT0308500.4	osa-miR5151	Translation	5.0	22.038	1	22
Osa05LNT0308500.4	osa-miR5487	Cleavage	4.5	13.365	1	21
Osa05LNT0308500.4	osa-miR5494	Cleavage	4.5	18.259	1	21
Osa05LNT0308500.4	osa-miR5522	Translation	4.5	14.351	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0308500.4	5	dcs5	Physiological trait	Source activity	RM440	RM430
Osa05LNT0308500.4	5	dcfs5	Physiological trait	Source activity	RM440	RM430
Osa05LNT0308500.4	5	nan	Morphological trait	Seed	RG13	RG573
Osa05LNT0308500.4	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus