© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa05LNT0308600.1
GCTTCCTCGCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGGTTAAAAGAAAATAATATGATTTCACTTTGTCAGTTTTCACGCACTATGTCTTACTGTGTGCCATGATTTTCCACTCCTTTTTACCTGAACTGCTCCTTTGGTGTGGTCATTTTATACTTATTTTAGGCACTAAACGTCGGTGTACCTGTTACTAAACATTTATTCTGCTCCTTTGGTGTGGTCATTTTATACTTATTTTAGGCACTACACGTCGGTGTACCTGTTGCTAAACATTTATTCAATTTTACTGTTCTTTGGTTCCTTTGCCAAAGCGCGTTGAACTTGAACACTGTCTAATTAATCGATTTACCAGCCGACTGTTGCATATATATATTCCCTTTGCTTTATTGATGTTGCACCCTGATTTTTACAGTCCAAAAAGGTATATTGAATTGAATGATTGTTGTTTTAGGGAGTGGGTGTCTATATTCCTAGCCCAGTCCTTTCACATGGGCAACTCTATGTTGCGTTCTCACGTGTGACTTCACCTGATGGTCTACGGGTTTTGATTGAGAATAACCCGCCTGAGTATATAGACAGCACCCATAATGTTGTTTATAGAGAAATTTTTGATGATTTAGGCCAGCAGGCAGCACATGAATGATCCACCACAACTCCAACAGTATAATCATCTTTGTTGGTTACAATCCTTTCCCTAAAGTATGGCCTTCCACTTTATAGTTTATTACTGGTGCTAAATTTAAGTTCATTGTATTCTTTTTACCCCTCATGTGCTTACTACAATATTGACTTTACTTCAGTACTTTGCATGCATGTTAATGTCGTGTTTCCTCGCATCTTTACATTATTCTAGATGATGCAGAAACATATAGCTTTTAAGTGGACGCATTTTAGTGAAATAATCTATATAGCCTTCCCCTCTTGTGATATTTTACCTTTTTATTCACCAGGTGGCCAAAATTGGTTACGATGCATTCTCTTACATATCACCTTCATTCTACATTTTTATTAGTAATGCTAAATTGAACCCCATTCTGTTTCTTTGTCTCTCATGTACTTACTAAAATAAATTTACTTTTCTTCACGACTTTGCAGGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGTAAAGATATAACTATTTATCCCTCATTTCTTCTGCTATGCTGATACATACTCCATGTAGATCTTATTTCTCTAATTTATTTTACTCGTCTGCCTGATCAGCGCTGAACACTAGATTCAATATGTTCTATATTAATACATGCTCGTGAAAAGAGACACTTATTGCACATGATCACCAAAATGCACATATGGATGTTTCTTTGAATAGTTTTTCATATGTTTCTTCGTTGCGGTTCCTGTCTGCTCACTATGGACCATATGGATACTATAGTTCATTTTCCATCTACATGTTCTCTTCTAATCTTCCTGAAAATACTATGGTGATCAACTCTGCTTTAGTAGTTCAGACATTGTACTGGTCAAACTCTTCCTCTCTAACAATAGGAACACGAAGTGTCTGTATAGCATAAACCATAAAATTTCTTTTGAAATATATTGTACTGTTCTGACAAATTCTATCCATGATCAGTTTTGACCTTTTCACGCAAATATACATGCATCCTTGCAATATGAATAGCCATTTTATCTAGATCTACACGTTAGTTATAGTTTTTTCAATTAATGTTTATTGTAGTGATCAGCATCTCAAGGCACACGCATTTTTCATCTAGACACTCTATACGTTGAAGATTACTTGCTCAATCTGCTGGTATAATTTATATTCTTCTTATTGTCAGCCCTGTTATTTTCCTCATGTATGACATTTCTTCCCATTTATTCTGCACAATCATCATTACTGGCTCAACCTATTGCCATCTGTTCAAACCACGTTTACAGACTAATTCTTATCTTGTCCCAGTTCATTTATTCACCGGAAATTGTTGCTTCAATTCTAAATCAGGATTCCCCCACCCAGATCATATAGCAGCTCCTCAATCACGTTCAATTATTTTTTATCCATGTTATGTGATCTTAACACTCAACTTTCCTCTAATACCTTCTGGTAGCCACGGTTGCTTCATAGCTTTTATTTATGTTCGGTTTTATATTTGTGTACCAACTGGTAAACAAGTTCAATGTAAAAATAATTTTACTGCATTTTACAAGTTACCTATAGAAATGTGGTATTTGGAGATTCTTGCATTCGTGAAGTAGTACAAAAAGTTCTGCATCTAATTTAGATTCTCTCAAGACTAATGCTTTTAATACTATCTCATATTTGATCATGCACATCTCCTATTAATTTAATCTTGCTACAGGTTCATGGCATGCTATTCATTAGGTTTTCCATCCACATGCTTCATAACACACTTACGTACCTTACAGTCTCACTTGCCATCTCATCAACTGTCACATAATATTATTTTCTCTTATTCAATATGATCAACCACTTCAACAACTGTTCATACATGGATGTTTCCCATATATACATATTTTCCTTAAAAGTTATCTGCTATCCATCATGCTTAAGCCTGTTGGTAATCGTACTAATGCAAGTTGCTATAATGAATAAGCAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGTGCGATGTACGATAGGACAGTACGAGAAGACGCATAACGCGAATACGTGAATGTTTTGTTCCAGACCGCAACACAAGGGAAGAGCTTTTCATCA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa05LNT0308600.1 | 5 | 19337361 | G | A |
| Osa05LNT0308600.1 | 5 | 19337689 | C | T |
| Osa05LNT0308600.1 | 5 | 19338153 | T | C |
| Osa05LNT0308600.1 | 5 | 19337975 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa05LNT0308600.1 | osa-miR5796 | Cleavage | 5.0 | 6.094 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR812t | Cleavage | 5.0 | 11.541 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR812u | Cleavage | 5.0 | 11.541 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5815 | Translation | 4.5 | 4.325 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5829 | Translation | 3.5 | 20.106 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR2873c | Translation | 5.0 | 8.755 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR5836 | Cleavage | 4.0 | 19.021 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR5337b | Cleavage | 5.0 | 18.831 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR6253 | Cleavage | 4.0 | 17.869 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR6253 | Translation | 4.5 | 15.398 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR396a-3p | Cleavage | 5.0 | 11.856 | 1 | 20 |
| Osa05LNT0308600.1 | osa-miR396b-3p | Cleavage | 5.0 | 11.856 | 1 | 20 |
| Osa05LNT0308600.1 | osa-miR164d | Translation | 4.0 | 10.451 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR417 | Cleavage | 4.0 | 15.877 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR417 | Cleavage | 5.0 | 12.265 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR814a | Translation | 5.0 | 18.028 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR814b | Translation | 5.0 | 18.028 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR814c | Translation | 5.0 | 18.028 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR1428b | Cleavage | 5.0 | 9.75 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1428c | Cleavage | 5.0 | 9.75 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1428d | Cleavage | 5.0 | 9.75 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1428e-3p | Cleavage | 5.0 | 9.75 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1846a-5p | Cleavage | 4.0 | 18.509 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1846b-5p | Cleavage | 4.0 | 18.509 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR1865-5p | Cleavage | 3.5 | 7.502 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR1846c-5p | Cleavage | 4.0 | 18.509 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR2093-5p | Cleavage | 4.0 | 11.325 | 1 | 20 |
| Osa05LNT0308600.1 | osa-miR2920 | Translation | 5.0 | 21.208 | 1 | 23 |
| Osa05LNT0308600.1 | osa-miR2923 | Translation | 4.5 | 8.707 | 1 | 22 |
| Osa05LNT0308600.1 | osa-miR812n-3p | Cleavage | 5.0 | 11.541 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148a | Cleavage | 4.0 | 6.301 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148a | Cleavage | 5.0 | 11.662 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148b | Cleavage | 4.0 | 6.301 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148b | Cleavage | 5.0 | 11.662 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148c | Cleavage | 4.0 | 6.301 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5148c | Cleavage | 5.0 | 11.662 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5157a-3p | Cleavage | 4.5 | 10.451 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5157b-3p | Cleavage | 4.5 | 10.451 | 1 | 24 |
| Osa05LNT0308600.1 | osa-miR5522 | Translation | 5.0 | 18.49 | 1 | 21 |
| Osa05LNT0308600.1 | osa-miR5501 | Translation | 5.0 | 15.722 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa05LNT0308600.1 | 5 | QPl5 | Morphological trait | Panicle/flower | RG13 | RG346 |
| Osa05LNT0308600.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0308600.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0308600.1 | 5 | nan | Physiological trait | Eating quality | RM163 | RM31 |
| Osa05LNT0308600.1 | 5 | dcfs5 | Physiological trait | Source activity | RM440 | RM430 |
| Osa05LNT0308600.1 | 5 | dcs5 | Physiological trait | Source activity | RM440 | RM430 |
| Osa05LNT0308600.1 | 5 | nan | Morphological trait | Seed | RG13 | RG573 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)