>Osa05LNT0312400.2

CAGTAGTAGCAGGAAGTTTCACATCCTATCTAATTTCAAAATATGGTATAAAATAATATTTGCAGATTTAAACATTTTTTTTGTCCAGAATACATGAATCCCCAGCTGTCCAGAATACATGAATCCCCGGAATATAAATCTGATTGTTCTAATTGGTCCTCTGTGACCCTTATACATGTGACACATCCTTTTTTCTTTCATCCCAAATCCTAGCTAAGATCTGTATCTAAATAACAAGATGCACGGGCATATTACTACGTTGTTGACCAGGGGATCATCCTCCAAGCATATGACTTCAACAGTCCAAGATTTTCATTGTCAGCTGTCTCATTAAATGGGAGGCAGTGAGGTATGACAAACGATTGTACATGCTCATTTTCTGGATATTCCTCCTTTTGTTGCTTGTACACACAGGCCTTCATTTTCCTTGCCTCCTTTTTCTTTGGGCTCATTGATGCGTACCTCTCTCTAGCACGCTTCCTTCTTAATTCTCTCTCTAGCACGCTTCCTTCTTAATTCTCTCTCTAGCACGCTTCCTTCTTAATTCTAATGCGTTGAGATAAGCACCATCTTCTTGCATTTTGTGCACACTTGCAAATTATGTTAACTCTAATAGGTAGAAAATGGAAAATCATAACTTGCATCTTTTACATTTCGCATTTATACTTCGCATATTTTCCTTTTGCGGCACATTGGAGGATGTGCATCTGTCACTGCCATGGTCTATTCGTGAATCCCTTGATGTTGTTAACAATGTTGGTGTGGAGACCCCAATACTGTTACGATTTTTTGGTGAATCCCCGACACTTGCATTAGTAATATCAGCAAAAGCGCCCGAGGGAGGAAATATGATCTTGTTAACGATGTTGGTGTGGAGACCCCAATATTGTTATCCATGTCTTAATGTGTGTAAGCCAGCTGAACAATCCTCACAACATGCTTCACATAAAGAGTAATAAAAGGTTAGCTACATTTGAAGGGTTTTGCCACACTGAGTTCCAAATCAATTTTTGGCCATGTACACATAAAATTTGCTTTTCCATATAAGTATGAGGGCCAGATAATTGAATACCCTCAACAGAAGCAATAATAGACAAGAATATTGTATGGTACCCCTAGGCTAAATCACAACAATCACATATCCGTATGGAATTTAATGGCTTACAAAAAAACGAAGTATCATTGGAGCAGTAAAGAATAAAATAAGATAGCATTGGTATAAAACTTTCAGGTCACTCATCTCCTTACCTCAGCCTACTTGCATTTTGATATGAAAATAGAGTTGCCTCCTAAGGAACGTGGCATGTGACATTGTATTTTAGCTTTCAATGTGATGATTTTGCTGTAATAATGCAGTCATGTTTCTGCAGTTGACATATTCATCTTTCCAAACTTCAATTTTCAATGTCAACCAGACTCTTGTTTTTTATTTATTTCTATTTGTATATGTGTTCTCCTAGATGTCAGCCCTTACAGATTTTGCTTCAACTTTGTCATCCCCACGACTGCTATAATGCATCAGCAAAAGTAGATATATAATATTCTATTTGTTACATCGCAGTTGATTTAACAGTGCAACTCAATGAAATTCTGATTTGAGTGGCTAAGTAACTGAAATAATAATGCTGAGTTGATTAGTTCGCTATTTTCATTTTCCTAGAAACATTGAAGCTTGCTGCCTTTTTAGAACTAATCCGGAACAAGACTTTGCTCGAATAAACCTTTTGTGCCTTTTTAGTAATATGCCCATGCTGAACGCTACGAAGCAATTGCATTCTCTTTAATAACTTTGAAACTTCCATGTCAGCAAAAAAAAAAAAAGCAGTAGGACCTATCAGTAAGACCTATAGAAAAGCACTCGATCAAAGACTATCCCATAATGCTCAAAAGCCCATACTCTTATTATGCTAAATATTTCAGTATAATTTATCGTGTCAAATTTTCTCGTTACATTTTTTTTGCACATTTTTTTGAAAAGATAAAGAATCACTTGCTGAGGATTATATATCTTCCATGGCACAGTATCTACCTCCTGAGGCAGGAACGAAAAGAACAAATTAACTCCACTTAGGCCATACAACAAATCTTTAACAGTGCTAAAAAATTTAGACTTCAAAGGTCACCCATTACCGATTCAAAACCTGTTCGCCCGTGGATCGATAGCGGCGCGGTGGAGAGGGAAGGGAGGGCTCCGGCGTCCAGGGACGGCG

Explanation	CPC Score
noncoding	-1.246

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0312400.2	5	22035185	T	A
Osa05LNT0312400.2	5	22036836	G	A
Osa05LNT0312400.2	5	22038044	T	C
Osa05LNT0312400.2	5	22037626	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0312400.2	osa-miR5804	Translation	3.0	11.371	1	21
Osa05LNT0312400.2	osa-miR166k-5p	Translation	3.5	8.206	1	21
Osa05LNT0312400.2	osa-miR395v	Cleavage	4.5	11.889	1	21
Osa05LNT0312400.2	osa-miR2118a	Cleavage	4.5	20.418	1	22
Osa05LNT0312400.2	osa-miR2871a-3p	Translation	4.5	14.797	1	21
Osa05LNT0312400.2	osa-miR2871b	Translation	4.5	14.797	1	21
Osa05LNT0312400.2	osa-miR2931	Translation	4.0	15.004	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0312400.2	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0312400.2	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0312400.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312400.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312400.2	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0312400.2	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0312400.2	5	nan	Physiological trait	Eating quality	RM305	RM178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus