>Osa05LNT0322300.1

CCTATGCGTATCATTACCAGTGCTGATAAAATGTTTCGACTCTCTTATAATCACGAGTACTACTGACAACCACCCTCCTTCCTCGCGTAGTTGCGCTCCTAAGCCTCGCTTTTGCCGGTGGTTGGAATCTCCACACCTGGACGCTCAGCCTGCTGCTGCAAAACCCCGAAGACTGCGGCGGTGACTCCCAACAGCAAGACACTATTTTTCAAGCACTCCTTCTGAGAATTTTCGTGAAGACCCCTCATTGTGGCCACGACGGTTTCCATCTTTGCCACTTTCAAGTCCAGCTCTGATTTCGTAAACTTCTGCAGCGCCTCGAATTCATGCCTTATGAAACGCTGTTCGTCCTTCAGCGCTTGGAGCTCTTCGTTCAACGTCTCAGAAACCCTGCCCTCCCGGCCGACCGCGTCGCCGCCGGAGGAGAGGAGCCGCCGCGGCGCGAGCCTCGCCGCCAGCCGCCAGCCTCGCCTTCGCCCCGGAAGCTGCCGCCGCTGCCAGCCTCGCCCTCGCCTGTGCCCCGGAAGCTGCAGCCGCCGCCGCCGCCATCGCGATCGAGTAGTGCAGACGCGAGGAACCCTAGCGAGCGCTCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCTGTTCTTCTTGCGTTTC

Explanation	CPC Score
noncoding (weak)	-0.923831

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0322300.1	5	28919906	T	C
Osa05LNT0322300.1	5	28919984	A	C
Osa05LNT0322300.1	5	28921419	G	C
Osa05LNT0322300.1	5	28921421	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0322300.1	osa-miR390-5p	Cleavage	4.5	7.618	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0322300.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0322300.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus