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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0323200.1

AACCCAGCTGATCGATCAGCCGATCCATCCATCCATTATATGACGACGACGCCCAAGTACACTTAACAATGGTCCAGTACCTTTAATACTCTACTGAGCATACACCAGTGCAAAATAGGCTAGACCACCGTATCCTCCCTGTATACACATAACAGCACAGGCAGTGCAGAATAAAGCCAGCTTCAAAATGTCTATGCCACCTATCAAGCATCTATAATCAGATCAAATGACTAGAAATAGGCCTGTGCGTGCCAACATAAGTCCAGTCCCGCTTTGTGTTTCATCAAGTTTTCAAACCAAACCATTTTGACATTAACTCTCATCCATGGGATCATTTCCACCGCCTCTCTGGGACTCTGAATCCTTGTCTCCAGCTCCTGAAGCTTTTGCCACGGAGTCTTCAAGAGCCTCCAGGAACGAAGCTACTGTGAATTTATATTTACTAGGGTCAACTCCAAATTGTGCTAGATCTATTTGCCCAGTCCGCAGCACATGGGTAAACGCTTCTACTTGCTGCCGCAAAGGAGGACTTTGCAATAGTTCAAGAATATCACCAGCAGTCCATGGGCCCTCTGGAAGATATGATGCCAACTGTTCAATGGGCAAAGTTTCCATGAGTGGTAACACCAAATCAGGCTTCAAGATGTCTCCTAATCCTAATCCAGCATCAGGGTCTGCCACAGCATCTGATGGCTGTATAGCACTCAGTATTCTCTGCAGGTCTTCCAACCGTACTGGCCCAGCAGCAGATGTCACCTCACCAGCTAAATCAGCAGTCATGCTCTGATCAACTAAATTCCCAGCTCTGGAGGAGATGTCATCATCAGCTGTGTCTTCATGTGACATTTCAGCTTCAATAGAAACTGCCTCACCATCTAATGGTCGGTTTATGTAGGCATTAACTTGGCGACATATTTGTGAGTCGTCATCAGCACTTGGCTCCTGCATCCAGAAGAAGAATTTCCTGCTATCGTGCCTGAACTTCAAGATGTAAACCCTTCCAGAAGATTGTGTTACCTTCTCAAAGACAGCCTCCTCAGGGAAGACAATTTGATCCTGTGAAAAGGGAATCAAGGATATACAAAAGTACGATAATTTCCTAGGATATACACAATGGAAATCAGGAGAAACAGACACAGCCAAGTTCAAAGTTCAAACATACGAGTCATACAAGTACAGTATTTGCAGATTAAAAAATGAGTGCACGATGACTACTAACTACTATCTATGCTCGAGAGGATACAACTTCAACTAGATTCTGTCCACGATCAAGCCATTGAAAATGAACCAAGCCTTCTTCACCCCTTCCTATGCGAACAAGACCCTTGCGTGTGTCTGGGATCACTCGTGTTCCATCAAGGGACATCTTACCCGCACGAAACTCGCACATGATATCCTGTAGGGGCTCTGTGCTCTCCATTGATTAAAGAGTGGCTACCACAAGGTGCAGGCCCAACAAGTGGGGGATTACGGAGGAGGGCTGGACGTCGTCGTCGTCGTCGGCGGCGGCGGCGGGACGGGAGGAGAGGGATTCTCCGACGCGATGTGATGTGATTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.682505
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0323200.1 5 29618359 T C
Osa05LNT0323200.1 5 29621021 G A
Osa05LNT0323200.1 5 29621196 T C
Osa05LNT0323200.1 5 29622141 A G
Osa05LNT0323200.1 5 29622283 G A
Osa05LNT0323200.1 5 29622327 G T
Osa05LNT0323200.1 5 29620711 A G
Osa05LNT0323200.1 5 29620139 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0323200.1 osa-miR5537 Cleavage 5.0 17.95 1 22
Osa05LNT0323200.1 osa-miR5542 Cleavage 3.0 13.246 1 21
Osa05LNT0323200.1 osa-miR1861n Cleavage 5.0 19.689 1 22
Osa05LNT0323200.1 osa-miR2055 Translation 4.5 17.553 1 21
Osa05LNT0323200.1 osa-miR3981-3p Translation 5.0 11.8 1 21
Osa05LNT0323200.1 osa-miR5494 Cleavage 4.5 6.956 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus