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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0323700.1

GTGGGAAGCGCTGAGGAGCGGCGGCGTGTGAGGAATCGGGAGAGGAGAGAGGATTTTTAAGGTTTTGTTGCCTGCACGAATCTTAAAGCAATCGGGTGGTCAAAAATTTACAAGATTTGTGAGGGGGTTTTCTGTCAAATGATCTATAGACATTCCCTAATTAATTAGGGTCCACAAATTGCTCTCGTGTACTGTACAACTACTAGTTATTAGAGCAAGTTTAATAGTATAGCCCACTACTAGCTCCAATTCATCTAATAGCCAATCTAATAGCTAATTCATATAATAATTGCTTACTATACTATTAGTATATGGTCCTACCTGTCATACACATATTGCATCTTGGAGTCTTTGCTGTAGCTGGCTATAGATCTGTAGCCCGCTGCTATTCTCTCTTATCTTTTATCTTATTAAAATATGTTGGTACCTGGCTAATAGTTACATGCTCTTAGTATAATAATTTACTGAATACACTATGCGCGGGGCACTCCTGCCTGCGCGCGCAGCATCTACAACCATGTGCAGGCAAGGCTGCGGCATATGCTCCACGTTTCTAGGTTGGCGCCCTATTCATGTCCATGCAAGACCAAGCGCCGTCTGGAGGGACACGATAAAGACGAGGACGATGTTGTCGAATGCGATATCTGCAAATGATCAATCGATTGTTGGATGTCTACGTACATGCAGCTAGGATGACGCATGCGCGCTCACGCAGGCCAGAATTGAAGGAAATCCCATTTGTATCATTAGTTAGTCCTATGCAAAATTGTATGAGAGGGAGAGCCGGAGAGGTAGATAATGTAGATTCCTTTTGTCCTTATGTGACGATAATTGTGCACAC

Coding Potentia
Explanation CPC Score
noncoding -1.33274
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0323700.1 5 29766349 G A
Osa05LNT0323700.1 5 29766019 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0323700.1 osa-miR5835 Translation 4.0 17.473 1 24
Osa05LNT0323700.1 osa-miR1860-5p Translation 4.0 15.87 1 21
Osa05LNT0323700.1 osa-miR1870-5p Translation 5.0 9.885 1 24
Osa05LNT0323700.1 osa-miR2118a Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118b Translation 4.0 14.865 1 22
Osa05LNT0323700.1 osa-miR2118d Translation 3.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118e Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118f Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118h Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118j Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118k Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118m Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118n Translation 4.0 14.865 1 22
Osa05LNT0323700.1 osa-miR2118o Translation 3.5 14.865 1 22
Osa05LNT0323700.1 osa-miR2118p Translation 3.0 14.865 1 22
Osa05LNT0323700.1 osa-miR2118r Translation 4.5 14.865 1 22
Osa05LNT0323700.1 osa-miR5339 Cleavage 5.0 15.638 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus