>Osa06LNT0324100.3

ATCAGCCACACGGCATTGTTATTTCAGACCATCCTTGTTTTCAAATAAATGAACAAATGCTCTAAAGGGGTAAAAGAAAGTAGCAAAGTAATCACTTTACACCAAGTCATTTCTTTCCTTTGGCATCTCAAATCAACTGGCAGTGATCTATCTGTACAACGGCATCCGCATACTTCTTTCATGTAAAAAAAGAAAAGAAAAGAAAAGGGACGCCGCTCCTTTGTTTCCTCTCTAGACATCATAGATATTAAATACAAAATGACATGAAAAACAAAACATGGCCATATGATTGATTTACACGATGGACGCACCTCATCTTTTACCCTTTTGTTCAGGTATCAGAGCTCTACCTCGTGAAGATCCTCGCCCAGGCCATTGTTGAATTGAAGTGATGAGTTACTACTGGAACGGCTGTGGGATTGTTTCTGTCCAGGAATCAACGGAGACTGCATCATGGTCCGTTGTCCATCTGGTGATCTCGAAACAGCATTGCCGCTCAACTGCTCTGAATATGCTCCACTCCATGATGCTGCTCGTGACCTTGAGAATGAGCTGCCATTCCCACTGCCAGATGGGGTCATGATGTTGTCCATACTTGGATACCGCTGAATATTTGATTGAACTGGTATTGATTGTACTGATGGTGGTGGCGAAGCCGAGGATTCCCGCAGAGCTATCGTGGAAGATGGTTGATCCTGATGAACATTGACTGTTGGGTCAGGGATCTGCTCTGACGCAACAGTAGCTGGAGTTGGCACAAAGAAAGTGGCACCAGACAGTGGATTCATGGATGGGGTGGCTGGTTTATTATATGACGGTCCAGTGGCACTTGCACCACCCTTGTTAAATGTGTCGACGTATCTTGATCTAACACCCATCCGTCCACGTGCTGAGAATTGGTTCTGGCTAGGTGGCATTGGTGGCATCCCTGAACTAGGCCCAGAAGGATTCAAAGGCCTTGCTTCTGAAAATCCATTAGCAGTATAACTTACACTGCCTGGGCCATTCGAACTCTGATCTGGAATACCGTTCTGGAACAAGGCCTTTGTTGGAGGTGGGGGAAGGGGAGGCTCCTCAGCAGGTATGTCAGCACCTTCTTCCACCCACCGCTTCAGCTTCTCGTCATAGTAGAACTTGTTTTGTTCCCCCAGCTTCGCCTGATGATGAGATCTTGAAACAAGTCCCATTGTCTTCTGCAGCAACCATCCAAAACGTGAACTACCTGAACCTGATGTGCTTTGTGCATTATCTAATCCTGGTTGGGGGTTCTGCCAAAGTCTGGTTCAGAGACACTTCTGTTATGTGTGACTTTTCTGTCAGGGCCAGTATTTCCTGACATTTCACTCATAGATTGCTCTGAAACAGAAGACATCAAAGAAGACATAGCCATCACTGGCTGATTATTCACAAAATTTGTAGCTGCAGGAGCCGAATAGGAATCTCTTTCGGTTAAGGAGCCCTGTGGCACTGGTGACAACGCTGAAGGTTGTGTACCCATCATGCGGGACAAAGATTTATCAAGTGATGTGAAAAGTTTTCCAACAAGCTTTGCAGGGGCTAGATTTGTACCATAACCACCCTGCTGGTAGGTGCGTATCCGCTCCTCTAGGGATGAAAACAACTGCTTCCATGCCTCTAATTCAGGTGCACGGCCAGATGCTTTCAGCACCTTCAAGCATGCTTGACAATACCTTAATGAATCAGAAACCTTCCCAACCTCCACAAGCATGTATGCATATATCAGCTTATATGGTTGAAATGGCAAGAGGATGTACTGAGAATTACCAAGAACTTTTGCATATTCATACACCTCTGTTCGCTGGATAGCTTCAGGGCTGGTAAATGTACGAGGACATCTCAAATGGTCTGCACCAATTAGACACATTCTTGAACTTTCTGAATACGACTCGATATTTAGTTCCGCAGCTAAATAGCATGAATGAGCAGCTGCCACCTCATTTTTCTCTTTCCAGAGGCAATCTCCAAGGTGCGTAATTACAAGATCATCACCTTTCGTCCTGTTTGCAGTTATAATAGCCAAATTCTCTTGCCAATCATCCAGCATGCTCTTAGAATTCACAGCCTCCACCGGCCGTTGGGGTATATGCAAATTACCATAATTGCCATCAACAGGGTTCTCAGCATTGAAAACATCTGCAGGCTGTCCCGCAATAAGAAGGCACAATGTCCTCAAAGGTGATCCAGATACAAAATGGTGGTAAGCCATTTTCTTCACAGTATCCACATAAAACTTATCACCAAGTTGTAAAGCAAGGATTAATGCGGGTCCCCAAAGCTGACCTTCCTGAGCATACTGAAGAGCCTCTTTCCTTCTACCAGAAACTAGGAGATTTTGAACCTCCTTAGCAGTAGCCTGGATCTGGTTTTCTGACGGAATGTTTTTCATGCAATGGACAATGGCTCCATACTCTCCCTTATGAGCACCACTACTCTTACAAGATGAGAAAAGTTTTGTCACTGCCATCTCTGGACCATCTATACCCTCCTGCGATGGATCAGACCCAAAAGGTGAACGGAGCTTTCCATAGTGTTGGCACAATATTTTAAGCAGTGAAATGAGCAACTTCTGATCATCTCCTCCCTGGAACTCCCTGATAGAGGAATCATAGCCTCCGGTGATCTCATCAAGCCACTTGTTCACATCCTTTGCTGCAGCACTTCCACCAACAAGGGGGCCAGGAATAGGTTGACGACACAATGCATGGAAGTAACTAAGTGCGCTACCACTAGGGATACTTGGATGATCAACTCTATCAGAAACAATCTCTGACACATTAAGAATTGACACTGTGCCACATGGATTTCCCTTAAATTGCAGCAATAAAGTTTTTCAGTCACGATGACATTGCAAAGAAGAGAAGTACAAATAAAAATTCTAATCGTACCTGATTCCCACTATCAAAGTTTGTGGACATTGAAATGGTCTCTCGCACAACTACAAGCTTCCCCCCAAATCCGAATGTAACCAAAGCATGTGGTGGGCGTCCAGCTGATGACCTCTGCTCATGGGAGGAATAACCAAATTGTTGAGGTAAAGCATTGGAACTGATGAATTGCTGCTGCGCAAAATTTACAGAGCTTCCAGTGCTCAAATAGTTATTTGGCAAATTCATGCATCCATCAGAATCAGCACGTGTTTGCATCTGGGGCATGTTTGCTGTTGGAACAGAGTCTTGTGGCTTAGCAGCACCATTGAAGCTGCTGTAATGGCTTGGTAACTGTTGGTATGCCACATGGTTAGCTTGACTATCTGTAGAAGGTCCAAATTCCTGGTGGCCAGTCTGGCCCGTAGAATAATCATATCCCTTATATCCCAACTGGTGACCTGAATAAGGCTCAAACCCCTTATAATTCTGGTTGCCTGTAGAAGGTTTAAATCCCTGGTGAGCAGCCTGTTGGACTGTGGAAGATTCAGAGCCATTGTACCCACTATGATGGCTGGTAAAAGTACTTTGATGACCTACAGATGGTTCAAAACCCTTGTAAACACTCTGATGACTAGTGGAAGATCCGAATCCCTTGTAACTCGCCTGGTGATCCTCACTACTAGTGTACTGACTTGTAGAATGCGCATATGTGTTGATATCAGCATGATAATACTTAGAAGATTCCAATGACTCGACATTTGCCTGCTGAGCAGTTTGATTCTCAGTGTGCTGGTTGGAACCATAAAAACTATCCGACAAGCTGTTATCACCCAACGAGCCATGTTGCTGTTGTCCCTGATGGCTATAGTCACCTGTGTAAGAATCACTGGTTTGAGCTACATTATGGCCTGTTCCTGCATATCCAGCTGAGGCTGCTGCAGTAGTTTCTGCCTGCACACCACCTTGCTGATACGACTCCAGTGAGAGCCACTGCTGAGTATTGGTGTCAAAGTACCATCCTGGGTATTCAGCGTAGAACACCATGTTGGACGGGTACTCTACGGCTCCTGTATTGCTCTCATTCGGGGTCCAGCTTGTAGCCATGGTGCTTCCCTCCTCTGCGATGGTCTCCAACCCCGCCTGTGAAGAGTCGTGCAAGTAAGAAACGGTGAACTGCTGCTGCTGCTGCTGTTGCTGCTGGTGAACATTATCACCCCCAACGACCGGTAAAGCACCAAGATTGTCAGCATTACCCTGTGCAGTGTAAGAAGAATCCACCTGATACCACTGTTGCGTCGCTTCATCGTACTTCCAGCCAGGGTAGAGGCTCTCAAAATACTTGGGATCGGTGGATGTGGAGTCGACAGCAGCGGCGGTGGTTGAGTCTGACTGTACGCTAGTGTTGTGATCCATAAACTCGGCAGCAGTAGCAGGCCATCCGGGCTGTGAATCGGCGATGTTATCCACTTGATTGGAGAATTGGTGATCCATGGAGCCAATGGTACTAGTGGTAGGAGGTACAAGTGAAGCCTGTATGGGCTGATCACCCGTCATGGTATGAGTATTATTACCTCCAAAAAATGCATCGTCGCCCATGAATTCTCCAAAAGGATCATCCCCACCGACACCGCTGTTGGTGGCGAAGGCGCTCCACTGCACCTGCTTGACGGCGGTATGGACGTCCTTTGCGGAGCCCGGCGAGGCGGCCTCTGGGTTTGGTGGCAGTGTGGCGGCGGGGGCCTTAACCTCCAGCTGAGGAGGAGGAGGGGCCTCGGGTTCCGCATTAGGAGGAGGGGGCGGCGGGGCGGTGTGAGGCTGAGGTGGAGGAGGAGGCGCGGCCTGGTCCGGCTCCGGTCGAGAAGGCGGCGGCGTGAGGTCGGAGGCGAGGCGACGGTTGGTATCGGCGTCATCGTCGTCGACGAGCTTGTCGAAGAAATCGGCGTCGGCGTCGTCCGAATCGGAAGCGGAGGCCATCGTTAGGGTTTGGGGCAGATGGGAGGGAGGGGGGCGGGCGGAGAGGTGGATGAGGTTAGGGCTAGGGTTTGGTATAGTTTAGGAGAGGGATCTGATCGATCGATTCGATCTCGAATTCGTCGTCTACTAGAGACTAGACTTGAATGAATGCGATGCGGAGAAGAGAAGAGAAGAGCGGAGGAGGAGGAAGACGACGACGACGACGCGTGCTCCTCCTCTCCTAGCTACTCACCCC

Explanation	CPC Score
noncoding (weak)	-0.983351

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0324100.3	6	388801	C	T
Osa06LNT0324100.3	6	389568	T	C
Osa06LNT0324100.3	6	389677	C	T
Osa06LNT0324100.3	6	390303	G	A
Osa06LNT0324100.3	6	390336	A	G
Osa06LNT0324100.3	6	390476	A	T
Osa06LNT0324100.3	6	391402	C	T
Osa06LNT0324100.3	6	391898	T	C
Osa06LNT0324100.3	6	392580	C	T
Osa06LNT0324100.3	6	393095	A	G
Osa06LNT0324100.3	6	394065	G	A
Osa06LNT0324100.3	6	392340	C	G
Osa06LNT0324100.3	6	393221	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0324100.3	osa-miR5526	Translation	4.0	14.903	1	21
Osa06LNT0324100.3	osa-miR156j-3p	Cleavage	4.0	17.357	1	22
Osa06LNT0324100.3	osa-miR395t	Translation	4.0	21.693	1	21
Osa06LNT0324100.3	osa-miR395t	Translation	5.0	15.781	1	21
Osa06LNT0324100.3	osa-miR395c	Translation	4.0	21.693	1	21
Osa06LNT0324100.3	osa-miR390-5p	Cleavage	4.5	12.674	1	21
Osa06LNT0324100.3	osa-miR396e-5p	Translation	4.5	23.748	1	21
Osa06LNT0324100.3	osa-miR1851	Cleavage	4.5	16.984	1	21
Osa06LNT0324100.3	osa-miR1865-5p	Cleavage	5.0	18.331	1	24
Osa06LNT0324100.3	osa-miR2097-3p	Cleavage	1.5	12.277	1	22
Osa06LNT0324100.3	osa-miR2864.2	Cleavage	4.5	15.981	1	21
Osa06LNT0324100.3	osa-miR2868	Cleavage	5.0	19.169	1	20
Osa06LNT0324100.3	osa-miR396g	Translation	4.5	23.748	1	21
Osa06LNT0324100.3	osa-miR396h	Translation	4.5	23.748	1	21
Osa06LNT0324100.3	osa-miR396d	Translation	4.5	23.748	1	21
Osa06LNT0324100.3	osa-miR2927	Translation	4.5	24.663	1	23
Osa06LNT0324100.3	osa-miR5503	Cleavage	4.5	9.953	1	22
Osa06LNT0324100.3	osa-miR5515	Translation	5.0	16.662	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus