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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0324400.1

GCCCCAACCGCCGAGCGCCACCACCCCGCCGAGTGCCGGCGGCGCCACTGTGCGCCCCCGCCGCCCCAACTCGACGGCCCCACTGCACGATCTGTGGCGCTGTGGCTACACAAACATCACTGTGTTAGTAGCTTTGCATGCATCGCTAGATGCTACCATGCCGATGAATCTTGTCACTCACTCACCATGCTGCTGCTAAAGCTAAAAAGCTTAGCTAGCTATGGAACATGGAAAACATGGCATGTTCTTGTGAAGGATTACTACGTTTCCATGCCATGTGCTGCCTAATAGCTGGGGCGGCTGGAGGTGCTGCCGCACAGTGCCGGCGGGGGTGGTGGGGCGGCGCTCGGTGGTGGCGCAGGGCAGCGGGTCGGTGGTGACGCGACGCCGAAGAAGC

Coding Potentia
Explanation CPC Score
noncoding -1.17108
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0324400.1 6 qHD6 Physiological trait Flowering RM8120 RM1369
Osa06LNT0324400.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus