>Osa06LNT0326600.1

CAGATATCATGGACATCATTATGCTCTGCTTGATCAACATGGTTATCTTTCTGTTCAAAACAGCTGCCAGAAGCAAGATGGATGCAGAGATACTTGTTGCCAGCATAGATGTATGGATCTTCATCACCAAGGGTTTGAAGCTGAGAGCCCTGGGGTACCATCCCGGACAGATTGTTGTAGGACATGTTCAGGTGGCTCAACAAGTGCAGTGATGTCATGCTTTCAGGAATTATGCCTGACAGTCGGTTCCATGAGAGATCAAGCGACTCCAATGAACTCATATTACCAATTGTCTCTGGAATATGACCACTCAGGAGATTTTTCGAGAGATTCAGGTTTTTGAGCCCTACAAGATCTCCAACTTCAGCAGGAATTCCACCTGTTAGATAATTGTTAGAAAGGTCAATGCTCTTCATCAGATAAAGGATCTTAGAATACAATCTTTCTTCTCCTTTGATGGTAATGTATAGACTCTCATTGTGATAGAGAGATCCACCAAAACTATCACCAGAAATCTGCATCGGTATAATATGTCTTGACCTCTGTGAAGCCATTTCACTAAAATTTCCAATACCTTGTGGCAGGGGCCCTGACAGCTTGTTATTGGCAAGATCCAACACTTGAAGACCTTGAAGCTGTGACAATTCAGACGGGATGCTTCCAGTGAAACGATTTGATCGCAAACGAAGAATCATGAGGTATTGCATGTTATCTCCTATCCATTCAGGTATGGAACCCTCCAAATTATTATCTCCAATATCAAGGAAAACCAGAAGCCCGCATGAACTTAGAGAGGAAGGCAACAACCCAGATAGCCTATTGTTGTTCAAATGCAGGGAACCAAGAAAAGTAAGAGAGCCAAGACTTGAAGGTATGTGTCCTTCCAGGTTGTTGTACGAGAAATCCACCAAAAATAGTTCTGTGCTGTTCTTCCAACAATTAGGTAGCTCGCCTGATAAGCTGTTGTTTGATAGGTCTATTGCTGACAACCATGGCATGTTGCAAAAGTACGCAGGTATGCTTCTATTTAGACGATTGCTTGACAATAAAATGTAACGTGTCTTGTTCCCTCCCACACTATTGGGCAATGATCCAGATAAAGAGTTGTTGGAGAGATCTAGCAGGTCTAGACTTTCTGGCATATCAGGAATCTGACCTTCCAATTGGTTCGAGCTGAGCCCCAAGAACTGCAGTGACTTCATATGAACCAGGGATGCTGGTAGCATGCCAGTAAGCAGATTGTCAGAGAGATCCAAGTTAATGAGAGAGGTCAATGACGTCCAAAGCCAATCAGGCAATTGACCTAGAGTCCCCGTTCTGTGCAAATCTAATGTCTGCATTCCAACTTGTGTTTGAAGCCACTGCGGGACTTGTGATTGTAGTGGGGAAGAACCTAAAAGGAGTTCATAAAGTTGAAAGGGTGGTAACCAATTTGCTCCCACAGAAATTCTCAAGGAATTGTAAGATAAATCTAGCTTTTTTAGCTTAGTTAGATTTGTTAGGTGTTGTTCAGACAAGACATCTTCGAGTGAATTGTGAGAAAGGTCCAGTTCAATTAACTCTGTGAGCTGACTGATATTGGTATGTACATGACCTGATAGTGAGTTTTTGCTGAGATCGACTGAGAAGAGGTTTGGGAAGGATCCAATCCACCCGGATAGACTTCCAGATAGATTATTATTCCCCAATTTGATCATAGATAGTCCCTTCATGCAGCGGGTCATTGCCTTCCCCAAATCAGCAATATCACCTATAAGGTTGTTGTTCGACAAATCAAGGATCTGCAAGTTACACAACTTAGATATTGGAATTGCTCCAATCAAACTGTTGTCAGCCAAGTAAAGGGTATTAAGGGCAGTTAAATTTCCCACAGATTCAGGAATTGAGCCATGCAGCTCACAATAGTCCAAATTAATTAATGACAGAGTGTATATGCTTGCCAACCAATTCGGGAATCTAGAGCTGAAGTTGTTGCCTGATAGATCAATTTCATTGAGAACTGTGAAGTTAGACTGGGATAGAGAATTTTGATTAGTGGGTGGAAGATTGGTACCAGACAAACGAAGCACTTTGAGGGAAGCAAGCATGTTCAAAGACTGCAGCCAATCTGAAGCCACAGAAAGGTTCCACAATGACATGTCAAGGTAAACCAGTGAAGAAAGCTGAGAGACCCAAAGAAGATTGTCAACAGAGCTACTGGAAGTAAAGCTGCTAAAGTTGTTATAAGGAAAGCTAATATCCAGGTAATTCAGCTTAGATAAGTTTCCAAGCTGAGG

Explanation	CPC Score
noncoding (weak)	-0.943382

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0326600.1	6	2096899	T	C
Osa06LNT0326600.1	6	2097233	A	G
Osa06LNT0326600.1	6	2097699	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0326600.1	osa-miR169i-3p	Translation	5.0	17.034	1	22
Osa06LNT0326600.1	osa-miR437	Cleavage	5.0	17.136	1	21
Osa06LNT0326600.1	osa-miR1851	Cleavage	5.0	22.662	1	21
Osa06LNT0326600.1	osa-miR2863a	Translation	4.5	13.309	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0326600.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0326600.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0326600.1	6	ac6	Physiological trait	Eating quality	RM190	RM587
Osa06LNT0326600.1	6	qAC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0326600.1	6	qGC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0326600.1	6	nan	Resistance or Tolerance	Drought tolerance	RM170	RM204
Osa06LNT0326600.1	6	nan	Morphological trait	Shoot/Seedling	OSR19	RM225
Osa06LNT0326600.1	6	Hd3b	Physiological trait	Flowering	nan	nan
Osa06LNT0326600.1	6	qAC-6	Physiological trait	Eating quality	R2869	R1962

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus