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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0328100.1

GCAAAATGCTACGATCCAGCACCTTATAAGAGATTTACAGATGAGTAAGTGAGCAATACATCATGATGTTCATATCATTAATTATCAGCAACACATACGAAAGAATACTTTGGTTTGTGGCTGAGCAAATCCAAAGGCAGTGCAGGAATCCGAAAAATTACAAAGACATGGTGCATCATGTTTTCTAAATGATTCATCGACCCAGAAGTGTGACGCGGTCCTTCTGAATGACCTGAGCCAGGTTGAGATCAAAAAGCTCACAACGAATTGGCATCTCCATCTCGTAGAATGGATTTTTCAAAACAAAATCCGTGTAGAGCTCGTATATGACTTTCAGTAGTGTCTCGATATTTTGAGCACCAGTTTCGCATACAGCAAAAAACTTTGTCCCTGTGAGGGACTGGAAGCAATGGAGATCAAAGTTATGGGCTTGTAGAAGGTCAATGCCTTCGCAGCCATGTGTAGGGGACAGCTGCTGGGAGATAGCATGCATGGAATGCCAAAGACTTGCCAAGCGTAGACTGTCATTGGTGTCCGTCCTACCTGCTGAGCCATAGTCCTTGTAGTATATAAGGCCGCCAGATTTGTTAATGATGAAAAGGCTGTAGATTGCTGCTGACGCCATTATCACACAAGAATGCTGAGTAGAAACTGAAGTAATTTTCCTGTATTAGCTAGCACCACGGCGAGACGACGCAGGGATTTCAGCAGGTGGTGGTGCGTGCGGGCGTGCGTGCGGCCCGGCGAGGTCGTCGCTCCCGCTCCGTCCGCCGGCGTCTTTCTTGGCGGCGGGATCTGCCGCGGCGAGCGATCGGAGCTGAAGACGAGGTCGGGAGCTGAAGAAGCTTTTTTTGACGGAGGAG

Coding Potentia
Explanation CPC Score
noncoding -1.2832
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0328100.1 6 2642690 C T
Osa06LNT0328100.1 6 2642830 T C
Osa06LNT0328100.1 6 2643096 G T
Osa06LNT0328100.1 6 2645023 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0328100.1 osa-miR5536 Translation 4.0 15.006 1 22
Osa06LNT0328100.1 osa-miR5804 Translation 4.0 19.693 1 21
Osa06LNT0328100.1 osa-miR2866 Translation 4.0 15.298 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0328100.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0328100.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0328100.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0328100.1 6 qAC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0328100.1 6 qGC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0328100.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0328100.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0328100.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus