© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0336700.1
CAGCAACCTGTAAACCGGTAATCTTTTCCAACTTACACGGGCAATTCTTTACAACATTATAGAGTAGATGCAGCTACATAAAATGACTTGGGGTGGTTCAAAGTGCACCAAAGATAATCTTACCTTAATATATTTAACACCGTGTTCCAGTGCCTGCAAAACACTTATGAGGTTTGTAGCAACGAGGATACATAAGCCCCAGAAATAACCAAGGCCTGCCTTCGAGAGATCTTCAGAAAATGTTTACAGTCATAATTTGTACATGTGAAAACTCTCAAAGCAAGAATCAACTGTCTAGACTATTTCAGGTCTTGGCCAGCAAGCTCTGTGATCACACTACAAAAGTCAGATACCAAAAGGAGATACACGAAAAATTTGCTCATATATAGGTTCAGGTTCCTATTATGATAGCACTAGCCGGCATATCACGCTGTATGACTACAGTAGCAAAGCATACAGAAGCTGTAATAGCACAGCTAGTCTGCACTAGAGCAAAAAGAAATGGAAATTACTACAATTTGCTTGCTTGAATGTGCCCCAAATTTCCAATTTGTCAAACAATCACCGAGAAGAAAGGAAGTATATGCACCTGCGTATATCAGAAGGTTGCCAGGAAACAGCCGGGCTGAATTCAGAGGGTAACATCCAGACTTCAAAGGTCACCCAACACCTCTATATATTTAGGACTAAAGAGCATTTTGAAGATCACCTTATGTTGATACGAAGTACGTCAACAAAGCGAGCAGAGATTTGAGTAGGAGAGATGTTCCAGCAGAATCATGATGCAACTATCACTTATTACGGATAAAGCCATCGTCTCCTGTTAGTAGCACAGATCGGAATCCGCATACTGTCCTGACATACTACTCTTCCTGTGATGATGGTGGCTGTAGGTCCAGCTTGTATGCCTGAATGTCCATTGGTGAGATAAGAACGTTTCCCTCCTGAGCTACATCACCAATTTGCTCAAGGTACCCTAGCATTTCAGGGTCATCATGTAAGAGATTCAGAGAAGTTGCCTTCACATCCAGAACGGCCAGATCTTTGAACATGTAGAACAAATTCACAGGCTCTTCTCCAATAGTTGTACAGTTTAATCCGCCCCTTCTGCAGAATGATGCATCCCAGCCTCTTCGCTGCAACAGAAGGGCAAATCTTGCTTCGACTGCTTCAGCATGGTGAAATTTTAGAGGCTGAGGGGCCTTCAAGTTCACAACATGTACATCACAGGGCAAAGGAGAAGTTAATGGAGCAAATGTTTGTTGAGCAAGCTTGAACGATTTTTCTTGAGCTTTTTTGCTCACAAAAGCATGCATTGGGTAGTTCAGGTGTGCACCCACACGGTGGGAGAGAAGAGATGGTTGTAGAGTTAGCAAGCTGTGAGTTTTAGGCAAGGCAGAAACATTTGACTCCCTGAGGAGGTGGAAGATTACATTCATAGGCCGGTTGTCCACCACTCCCTGGCCCAGACCACGACCATCGTCCTGAGTTAGTCTACGATCCAACATAATCTCCAGCCATCCATTTTTTAAGCTTGCTGCCCCTAGTGACTGCTTGGAGTGTACTGAAAACCGATTGCCCAGCGAATCCTGTAAAAATGCAAGTGATGGCATTGGGTAGTAATTGCCCTGCAAAGGGATCTTATCATATGTCTGCCTCCTACTCATCTGAAAGCCATTTAGATCAGAATAGAAGACTCCTTGGTTGTCAATATCTGTCTTGAATCTGACAATCAACTCCTTGTCATTAAATACATGGCCAACAAGTTCAACATGGTATTCCTTCTCAATCAGCATATCCTGTATAGAGTCTCCACAGCTATAAATCCGTGTGCTATGTGAGATGGGTGACTTATGCCACTGTGTCTTTGGAAGGGAATGAGCCTCTTGAACCAATGGCCCTTCACTAAGGATGAAATATCCCCCTTCCTCAACAATGGATTGTGCTTCCCCTATTGGTTTGAACAAGTATGCCCCACTACCGTGGCTGCGGTACATGCCAATTTCTTCACCAACATCGGTGTGTTCCCCATCCTTGTTGCGAGTTACTGTCTGGAGGAGGCCATGCCTTACATCAAAAGAGAGAGAGTGGTAAGAGTTCTTCATCTCCACTGTTTTTCCTTCCAGTTTTGAACAAACATATGGTTCAGGGCAAGGAAATTGCCCAGCAGTTGTGAATGCCTTCACCACAGCTGGAGTCGCCTTTGCACAATCGTCGTACCCAGTAGCAACATAGTAGGTCTCCAAACCAAGAGCAGGAACAGAAGCTCTCCAATAAAGACGGTGCTGGCCAGTAGAAACCTTTTCGCCACTAACATACTGCCACTCAGGGGAAATTTGACTTCTCAAACAGGAACCATTTGAATTGAGAACAGATACATCAGGATTACTTACAACAACCATAACAATCTCATCCCTTGTTTGCTCTAATGGGTTAAAAAGGACAACAGAATGTGCCTTCCCTCCATGAGGGTTGAGAACCTTGTATACAGGTTGAACATCATATTTTGACCGTTCCTGCACTGGCTCAAAATGCGATAGTAAGGTAGGATCAGATCTGTCATGGATATCACCTAAAAGCACTTCAACCGCCCTGGACATAAAGAGCTGCAAGTCTTGCAAAGAAGTGTGCATTCGAGTCCCATAGTCCACTACAACATGATCCTTAGCTGTGCCAGTTACACCATCATGATGCTGGAAGAGTGCCAGGTTCCTCCTAGCTGCTGTTAGCTTGTGAGAAAAGCTGATGGGGAGTTTTACACATTGAAGCTTCTGACAGTATCCTAGAACAAAAGAACTCAGAATCTCTGAGGCACGTAGTGTCTGTTCTAGTACTCGGTCAACTGCTTTGAAGTACGGCCTTGATACATAGTAACCACTCCAGTAATCCTGATTTCTATCAGCATATGTAAAGAAATCACCTGAAAGTGTTGGAAAACCTGGCAGCTCAGAAGAAACCAGTTCACCAGGGCGTGTATAGTTTATCCTTTCAGCTTCATCTCTCAGCGTGGAGAAGTAATCCTCCAGGGTACCAAATTTTACTTCAGCCTTAAGATGGGGATTAGAGTTTATGTAATCAAAAAGCTTTTCATAATTGCGGAACTGTGCTTCTGCTTCCTCTGTACTAACATACCGGAAATCATCCCCCAATGGAATGAGAAGTGTATTTGTTCTGTACAGCGTAGACTTTTTCCTGTATTGATCTAGAAGTTTCATTGCCCTCTCTTGCACATTGTTAGCATTTGTTTCAACTGGATCAAATCTCCACGGGCAAGATTCATAGCTGAAGCTACGCATTCGAGCAAAGTCAAACTGGCAGCAGATAGCTGGTTCTGGTCCACAGGTGTGTGGAATGTCATAAGAATAGAAGGGCATCATATGAACAAATATATCAGTTGTTTCATCTATATCCCAGTTCTGCCTCCATAAATATTCAAGGTTCTTATTCATCGCAAGCTCCTTTTTCAATTCATAATGCGTTCGCTGGATTAACATGTTGTGGAAACCCATTCTCCTCAGCAGATAAGCCATGGTAGCTGAATAACCAAATGGATCAATTGACCAAGAATTTTTAGGAACAACTCCAATGGTATCATTGAGCCACATGTTTCCCTCCATCATCTGCTCTATGATAGCAAAATAGTGGGAGTTTGCCTCGTCATTCATGACCCACCCTCCACTGACAATCTCCAGCTGTCCATCACGCACAAGCTTGGTGAACGCCTCCTGCTTCTTCCGAGGGGCGTCGCGCCACCACCTCTCCAGGTATGACATCTCCTCCCATAAAAATTTCCTACGCGAATCCTTGGAGAGCGACTCGATGATGGTGTCGAGGATGTGGCGCGACTGCTTCTCGTAGTACTCCTCGACGGTGAGACGCCATCCGGGGTCGTTGTGGGAGTGGGGCGCGACAAACACCTTGAGCTTCTCGCCGTCCCACTCGTCGCTCTTGTAGGAGACCTCCCACCCTTGCTTCCACGCGCCGCCATCCACGTCCAGGAACTGGATCCGGTCGTACAGGTCCTTGGTGGTGATGTCCACGTGCGCCTCGCGGCCGATCCGCGCGGCCACGGCGGCGGCGGCCGCCTCCGCCGCAGCCGAGTCGCGGCGGAAGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0336700.1 | 6 | 7570082 | G | A |
| Osa06LNT0336700.1 | 6 | 7564710 | T | A |
| Osa06LNT0336700.1 | 6 | 7564770 | G | A |
| Osa06LNT0336700.1 | 6 | 7564821 | C | T |
| Osa06LNT0336700.1 | 6 | 7565000 | T | C |
| Osa06LNT0336700.1 | 6 | 7565220 | A | G |
| Osa06LNT0336700.1 | 6 | 7565385 | G | C |
| Osa06LNT0336700.1 | 6 | 7565748 | C | T |
| Osa06LNT0336700.1 | 6 | 7565754 | A | G |
| Osa06LNT0336700.1 | 6 | 7566413 | T | C |
| Osa06LNT0336700.1 | 6 | 7566692 | C | T |
| Osa06LNT0336700.1 | 6 | 7567800 | T | C |
| Osa06LNT0336700.1 | 6 | 7568088 | G | A |
| Osa06LNT0336700.1 | 6 | 7564185 | T | C |
| Osa06LNT0336700.1 | 6 | 7566942 | A | G |
| Osa06LNT0336700.1 | 6 | 7568316 | C | T |
| Osa06LNT0336700.1 | 6 | 7568328 | A | T |
| Osa06LNT0336700.1 | 6 | 7568462 | C | T |
| Osa06LNT0336700.1 | 6 | 7568931 | G | T |
| Osa06LNT0336700.1 | 6 | 7569784 | A | C |
| Osa06LNT0336700.1 | 6 | 7568834 | T | C |
| Osa06LNT0336700.1 | 6 | 7563910 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0336700.1 | DTM_#DNAt_MULE_japo_Os0312 | Chr6 | - | 7563730 | 7564101 | 206 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0336700.1 | osa-miR5540 | Cleavage | 4.0 | 13.992 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR5827 | Translation | 3.5 | 12.326 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR5827 | Translation | 5.0 | 17.728 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR6256 | Translation | 5.0 | 11.758 | 1 | 22 |
| Osa06LNT0336700.1 | osa-miR164a | Cleavage | 5.0 | 21.754 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR164b | Cleavage | 5.0 | 21.754 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR167a-5p | Translation | 4.5 | 16.033 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR167b | Translation | 4.5 | 16.033 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR167c-5p | Translation | 4.5 | 16.033 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR394 | Cleavage | 5.0 | 19.085 | 1 | 20 |
| Osa06LNT0336700.1 | osa-miR164c | Cleavage | 5.0 | 21.754 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR169i-3p | Cleavage | 4.5 | 20.099 | 1 | 22 |
| Osa06LNT0336700.1 | osa-miR164f | Cleavage | 5.0 | 21.754 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR419 | Cleavage | 3.5 | 16.419 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR390-5p | Cleavage | 3.5 | 16.662 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR390-5p | Cleavage | 5.0 | 21.726 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR1850.1 | Cleavage | 4.5 | 18.321 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR1854-5p | Cleavage | 4.0 | 15.898 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR1846e | Cleavage | 5.0 | 24.352 | 1 | 20 |
| Osa06LNT0336700.1 | osa-miR2104 | Translation | 5.0 | 18.2 | 1 | 22 |
| Osa06LNT0336700.1 | osa-miR2867-5p | Translation | 4.5 | 19.447 | 1 | 22 |
| Osa06LNT0336700.1 | osa-miR5073 | Cleavage | 3.5 | 14.797 | 1 | 23 |
| Osa06LNT0336700.1 | osa-miR5147 | Cleavage | 4.0 | 20.413 | 1 | 21 |
| Osa06LNT0336700.1 | osa-miR2873a | Translation | 4.5 | 16.6 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0336700.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | nan | Resistance or Tolerance | Lodging resistance | C1478 | R2171 |
| Osa06LNT0336700.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0336700.1 | 6 | nan | Morphological trait | Panicle/flower | RM276 | RM121 |
| Osa06LNT0336700.1 | 6 | nan | Physiological trait | Source activity | RM276 | RM121 |
| Osa06LNT0336700.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0336700.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0336700.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0336700.1 | 6 | qGT-6 | Physiological trait | Eating quality | RM276 | RM121 |
| Osa06LNT0336700.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0336700.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0336700.1 | 6 | qPSP-6 | Physiological trait | Flowering | R2171 | RZ144 |
| Osa06LNT0336700.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0336700.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0336700.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0336700.1 | 6 | sd6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0336700.1 | 6 | tns6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0336700.1 | 6 | sd6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0336700.1 | 6 | tns6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0336700.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0336700.1 | 6 | S5 | Physiological trait | Sterility | RG213 | C235 |
| Osa06LNT0336700.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | nan | Resistance or Tolerance | Blast resistance | C1478 | R2171 |
| Osa06LNT0336700.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0336700.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)