© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0341400.1
GGACACTAATAAGATCATTAATTTATTGCGAGCCTCTGAAAATTTGCTAAAAACACCTTACTCCTAATGGACACTAATGTAGCATCCCTTGAGATAGATCACGTGATACATTATATCTTACAGAGGTCATGCTACCCATCGATAATAATAAGGAGATGTCAACAGTTTATAAATCCTTTTGTTAAAGCTCAAAATCAAAGCCACTAGGTCTATCTACTATATATAACCTCTTTGGGGAAATGTATACAGCCTGTCCCTAAACTACATCAGGGTTAGCTTCTCTAGGACGTGCAGGATGAAGAAAGGTCCATGCCCGCCCCAGCGACTTTATGAACAAGTGACTCCTGTAATTCAAATGCCTTTCCAATTTCAACTCTTCAAAGTATAATCTGTCAGCTGATCATGAACTCGTGGAAACTCCGGATGGTTCCAGGAACTTTGGTTGGTACTACTCCAAGGTATATTTCTGCCAATGGAGTAATACATTGTTGCATCATGCAAAATCACTGCAACCCTGAAAGCACGCTGCACTTGGAGCATGTGAAACAGATACATTTTTTCCAGATCCCTCCATGCAAACATCATGGCAAATGATTGTCCGCATGATGGTTCTGGCTAAGCTTTTGAGCCACTTGGATCATATTTCACTACATCAGTATCATCTCAAAAGCAACTCAACAAGATTCCATACTCATTCATCACAGCTGAAATGTACCCAACTCCTGACCATGCCTTGTAAGCTTAATAGTTTTTCCACTGACCCACTGAAGGCGGTAAGAAAGGTCAAGATTATGAAGCAACAGCTTCAAATTATCAGCCTCATCTAGTTCTCTTGTCTTGGTCTCTGAGTTTTGATGTTTATCATGTCCTAAAATGCTTGAAATTATACTTAGACGAGCTGAATTGGGTGAAAACCCTTCCCATGGAGGAACATAGATAAGCTTTGTGCATTGGATAGGAGTAAGACTTCTGCTGAGTCTCTCCCACCAGGCATTGCCTAGTGACCACCATCTAATCATCAGTCCGTTCTCAGAAAAAGCAACAAGACCCTCTCCCTCCAGTGAAAAACTCAAAGCTGTTATCAGTATAGTTGCCGTTGTATTCGATGATCCATCAAGCAAACTTGGAAGACCTGGTGGTCCACTTGCATCAAGAATCCTTATTTTCGTGACACTTTCTATGTCATAAACTCGGATTGTGGCATTATGTATCTCCCCAATAGCATCACCAACAGCTAATCTTGTCATCGATTCATTGAGGGCAACCATAGGAAATACCCGTGCGATTTCTCTCAGAGCCATCATTGAGTTAATAATGCAAGCTTTACGCATAATTAAATTGCTTGGATCCATAGTGTGTAGGACGTAGCTGATTGCCTTGTCAAGGTAAGGAGCCAAGGCCTTTGGAGAACCTCGAACAACTCGAATGAGAGTTTTAAGTGAAATTACATGAACAGGTGAATCAGATGAAGTAGCCCAGATTTGGCTTTGTATTACGCCAAAAAATCCAACTATGTCAGCCATAGCCAAGCTTGGCAAGAGAGTACCAACCAATGCCTCCCGCATTGTGACAGCAACTGCAGTTTTATAGACAGCATTGTTGGAAGGTGCACTGCTTAGACATTCAATTTGGAAAAGGACATCACTCAAAAAATGAGTCATATCAGTGCCTAAACATACTTTCCATGTGCTTTCCATTCCCTCTGCTAGAAGTTCAGCTGCCGTTGAACTATAACGATCATTCATCGACATAACTAACTTGATTAGTTGATTAACAACCAAATGAGCAAGCTTAGGTTTCACGATGCTTGGGTACCAAACAACCAAAGCAGCTGCAACAATGATATTTGATGCCACTGCATCCTGACTTGTTCCTCCAATCCAAGATAGCCACTCTTGATTTTCAAATGATTCCAACCATGAGCTTATCTCAGAAGTATCACAATCTTCTCTCCCAACATCTTCATTATCCGCTTTTAACTGTCCATAACTAGATACAGAGGCACTCTGAATTGCAGTAATAATATTGTCCATCTGATCAGATGTAGGCAACTGGGAATCAAATACTTTGTTTTTCTGCAAATGGAGGGGTTTGGGGATAGAACGTGGAGCTGCACAGTGAAACAGGGAGCGTGCAGCCATTCGCACATGTTCAGAAGGATGTTGCCAAAAGCTCACCAGAAGCTGAAGGGATGGAGGCTTTATATCCGGTACTTTCTCAGCAAAATTCCTTGTATAAAATGCTGCCAAGGCACTGCTAGCATTTGTACAAGATCGAGATAATGTTATCATGCGTTGTGCAAGAGAAACTATGCACAATGATCTCATCGCACAAAATTCAGATGATGCCTTCCAAAGCTCGAGAGTGGCTTCTTTTCCTGGGAACATCAATGTAAATGAACCTCTATCCCCCACCACCCCTGTAGCTATATGACAGCCTTCTGGCTTGCAAACTTGCATTTCATCTACAAGTAATTTGTCTAGCTCATGATCAACACCCCATAAATGCAGAAAACAGAGGCTAAATCGAAGTAAACGCCCTTCCAATGATTCTCTAGAAGGGCTGTCGATTACATGCATTCCAGAAGTATTATCGCAAGTTTCAGCCTGTATAGAATCATTAACATTATCCCTATAAAAATGATCTCTCAACTGCCTATCACTATTGTTGTTTGCCATGCCTTGTGTAGACATGATTGCTGTGAGATCGAATCTCAGACTTGCAATGCCAGGATATGGGCAAGAGCACTTTATGGGGTGTTTTCTTCTGTTGTTTATGCACTGACCAGAGGCAACTTTCCCTGAACTATTTCCATGGAGTTCGTGTGCTTCATCTGTAGCTGACATCTTCCCCATAACATCAGATGCTGCAGGGACACTTACAGTCACAGAATTTGTATTTGCATTGTGATGGTTTGTTGATACAGATGATATACTAAGACCCTTTTTATTTGCATGAGACTGAAGGAGGCTTGTGTCTTTGAAAATTGGAACAAGTAGTGAAGATGCCGAAGTTGTCCCTCCCAAGATGCTGCCAGTAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0341400.1 | 6 | 13101840 | T | A |
| Osa06LNT0341400.1 | 6 | 13102226 | A | T |
| Osa06LNT0341400.1 | 6 | 13102763 | C | G |
| Osa06LNT0341400.1 | 6 | 13102918 | A | G |
| Osa06LNT0341400.1 | 6 | 13103653 | A | G |
| Osa06LNT0341400.1 | 6 | 13103656 | T | C |
| Osa06LNT0341400.1 | 6 | 13104481 | A | T |
| Osa06LNT0341400.1 | 6 | 13105069 | A | G |
| Osa06LNT0341400.1 | 6 | 13105360 | A | G |
| Osa06LNT0341400.1 | 6 | 13106997 | A | T |
| Osa06LNT0341400.1 | 6 | 13107098 | A | C |
| Osa06LNT0341400.1 | 6 | 13107245 | C | T |
| Osa06LNT0341400.1 | 6 | 13108065 | A | G |
| Osa06LNT0341400.1 | 6 | 13109343 | C | G |
| Osa06LNT0341400.1 | 6 | 13109799 | T | C |
| Osa06LNT0341400.1 | 6 | 13109998 | C | A |
| Osa06LNT0341400.1 | 6 | 13110045 | A | G |
| Osa06LNT0341400.1 | 6 | 13110116 | A | G |
| Osa06LNT0341400.1 | 6 | 13110721 | T | C |
| Osa06LNT0341400.1 | 6 | 13112720 | A | G |
| Osa06LNT0341400.1 | 6 | 13112780 | A | G |
| Osa06LNT0341400.1 | 6 | 13107219 | C | T |
| Osa06LNT0341400.1 | 6 | 13102657 | T | C |
| Osa06LNT0341400.1 | 6 | 13109191 | C | G |
| Osa06LNT0341400.1 | 6 | 13109006 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0341400.1 | osa-miR5827 | Cleavage | 5.0 | 16.114 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR397a | Cleavage | 4.0 | 16.977 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR397b | Cleavage | 4.5 | 16.977 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR397b | Translation | 5.0 | 13.339 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR159a.2 | Translation | 4.5 | 16.355 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR444a-3p.2 | Cleavage | 4.0 | 24.939 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR535-5p | Translation | 4.5 | 21.021 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR444b.2 | Cleavage | 3.5 | 24.939 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR444c.2 | Cleavage | 3.5 | 24.939 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR444d.2 | Cleavage | 4.0 | 24.939 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR444e | Cleavage | 4.0 | 24.939 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR810b.2 | Cleavage | 3.0 | 12.183 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR1852 | Translation | 5.0 | 15.057 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR1866-5p | Translation | 4.5 | 16.37 | 1 | 24 |
| Osa06LNT0341400.1 | osa-miR1866-5p | Translation | 5.0 | 24.374 | 1 | 24 |
| Osa06LNT0341400.1 | osa-miR1866-5p | Translation | 5.0 | 17.058 | 1 | 24 |
| Osa06LNT0341400.1 | osa-miR1876 | Cleavage | 5.0 | 9.144 | 1 | 24 |
| Osa06LNT0341400.1 | osa-miR2093-3p | Cleavage | 5.0 | 21.858 | 1 | 20 |
| Osa06LNT0341400.1 | osa-miR2872 | Cleavage | 4.5 | 23.166 | 1 | 21 |
| Osa06LNT0341400.1 | osa-miR1863b.2 | Cleavage | 5.0 | 24.064 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0341400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0341400.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0341400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0341400.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0341400.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0341400.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0341400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0341400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0341400.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0341400.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0341400.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0341400.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0341400.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0341400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0341400.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)