© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0349600.1
TATATTGCACGACTATACCGATTGCTCGACAGCAGACAGGGTTAAACTAAAGCTAATAATAGATACCACATAATAGTCAGCCTGGCATAAATGTATTGCACAAAACACCACCAGTTCGAAAGGTGTACATACCATTCGAAATTTGGTATATAACTTTTGGTATGGCATGAACTCTCTGCTTCAAAGTTGGGAGTTTCTCCAATATAATCAATGGATGATAGATGGCATCAGTTACTAAGTTTTAAGGTAGAGAGAACTATTATGTCTTCTGGTGCACCGATGGTTGATCTTGCAATTTGTTTGAGTTATCTGGCTCGACTTTCAGGGAGCCTGGTTCGTCTATGGCCATCGCACTTGCATCGGTAGGCTGCAGTTGTCAAAGAGCAAAACATGAAAAGGCAGCCGTTGTTACCACAGAGATCCATGACAGTTCACTTACGTGCAAGTCTACCTTTTGCAAGATTACAAGTTTGCACAAATAAAAGAGCACTTACAACAGTTTGTTTCGAGGAACCAACTCCATCAGCCGCAGGTTCTGTGCCCTTGGTGTTCTCTGCAGCGACCCTATTACCATCCTGATCAGACCATGTCATATGATTCTAACTGCTAGAATCCCCTGAACGGTTACAGAACTGAATAGAAACAAATACCTTCCTGAGTCATCCAAAGGTTTGACATCATCCATTTCCACATCAGAATCAGCATGGTGCCTTTCATCAGGATCCTCTTGGTCTTCATCTTGCTCAGGTAGCTCAGCCTCAGGGGGTCGCTCTTGAAATTGGACGCTAGGAGCATGTCGAAGTTTTGAAAGATTATCAAGAAGTCTTGATCTTATATCATCCAACTGCTGGCGTGTGTTTTTGTTCTCCATGTTACTTGGTGCAACATGAAGTGTATAATCTGGACCAAAGTACTCAAAATACTCATTTGGAGGCATCTTGTCAGTGAGCTCATGACCAAGTGCAACTCCTGTCTCATAGCACCAACACCGCGCAACATTTCTTATGGTATACCCACCACCACCAAGCAGCAACAGCGGGACATTGAAGGACCTCATGAATCTCACGCATTCCGCGTGGCCCCTGATTGACAGGTTGAAGCAACCCAACCTATCACCCGACAGAGAGTCCGCACCGCACTGGAGCACCACCGCGCCAGGGCGAAAAACCTCCATCACCTTCCCCATGATCGGCTTGAACAACGACTGGTAGCTCTCGTCGTCGATACCGTCGTCCAACGGGACATTCAGAGAGTAATACTTCCCCTTTGAGTGCCCAATATCGCGAATGTCCCCGGTCCCCGGGAAATAATCCCCAAACTTGTGGAACGAGACCGTCATCACCCTGTCCGTCGTGTAGAACGCCTCCTCCACACCATCCCCATGGTGGATATCGATATCCACATAGAGAACACGCTGGTGGTATTTGAGGAGCTCGAGGATGGCGAGGACGATGTCGTTGACGTAGCAGAATCCCGAGGCCTCGCACTTCTTGGCGTGGTGGAGGCCGCCGGCCCAGTTGATGGCGATGTCGTGGCCGTGGTTGAGCTTGACGGCGCCGCCGACGGATCCCCCGGCGTAGGTCTGGCAGAAGCTGTAGAGGCCGTCGAAGACGGGGCAGTCCTCGCCGACGTTGAAGCGCTTGAGCGCCCGGATCTGGTCCTGCTGGGTCTCCGGCGTGACGGAGCGGAGGAAGGCGACGTAGTCGTCGGCGTGGAAGCGGCAGAGGTCGCGGTCGCGCGCCGGGTGGGGCTTGAGCACCTGCATCTGGTCGAGGAGGCCGTAGTGGGCGAGCAGCGCGTGGGTCATCCGGATGCGGTGCGGCTTCATCGGGTGCCCCTGCCCGTAGTAGTAGTTCCCCACCTCCGCGTCGTAGAAGTAGCACACCCGCCGCTTGGCCCCGTCGGCCCCCGCCGTCGGCAGCGAGTTCCCCCCGCCTCCGGCGGAGGCGTCCATGGCGGCGGCGGCGGCGGCGGCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0349600.1 | 6 | 22795405 | G | A |
| Osa06LNT0349600.1 | 6 | 22794717 | G | A |
| Osa06LNT0349600.1 | 6 | 22794821 | T | A |
| Osa06LNT0349600.1 | 6 | 22795390 | A | G |
| Osa06LNT0349600.1 | 6 | 22795550 | G | A |
| Osa06LNT0349600.1 | 6 | 22795710 | G | A |
| Osa06LNT0349600.1 | 6 | 22795722 | T | C |
| Osa06LNT0349600.1 | 6 | 22795849 | A | G |
| Osa06LNT0349600.1 | 6 | 22795905 | T | C |
| Osa06LNT0349600.1 | 6 | 22795961 | A | G |
| Osa06LNT0349600.1 | 6 | 22796079 | T | C |
| Osa06LNT0349600.1 | 6 | 22796360 | T | G |
| Osa06LNT0349600.1 | 6 | 22796734 | T | A |
| Osa06LNT0349600.1 | 6 | 22796789 | C | T |
| Osa06LNT0349600.1 | 6 | 22797034 | G | A |
| Osa06LNT0349600.1 | 6 | 22797053 | C | T |
| Osa06LNT0349600.1 | 6 | 22797156 | C | T |
| Osa06LNT0349600.1 | 6 | 22797577 | A | G |
| Osa06LNT0349600.1 | 6 | 22797702 | A | C |
| Osa06LNT0349600.1 | 6 | 22797853 | T | C |
| Osa06LNT0349600.1 | 6 | 22797871 | G | A |
| Osa06LNT0349600.1 | 6 | 22797922 | C | T |
| Osa06LNT0349600.1 | 6 | 22797972 | T | C |
| Osa06LNT0349600.1 | 6 | 22798222 | T | C |
| Osa06LNT0349600.1 | 6 | 22798223 | T | C |
| Osa06LNT0349600.1 | 6 | 22798230 | A | G |
| Osa06LNT0349600.1 | 6 | 22798692 | A | G |
| Osa06LNT0349600.1 | 6 | 22798935 | A | G |
| Osa06LNT0349600.1 | 6 | 22798965 | C | T |
| Osa06LNT0349600.1 | 6 | 22798974 | G | T |
| Osa06LNT0349600.1 | 6 | 22799076 | T | C |
| Osa06LNT0349600.1 | 6 | 22799127 | G | A |
| Osa06LNT0349600.1 | 6 | 22799316 | A | G |
| Osa06LNT0349600.1 | 6 | 22799367 | A | G |
| Osa06LNT0349600.1 | 6 | 22799481 | G | A |
| Osa06LNT0349600.1 | 6 | 22799523 | G | A |
| Osa06LNT0349600.1 | 6 | 22795615 | C | T |
| Osa06LNT0349600.1 | 6 | 22795996 | T | C |
| Osa06LNT0349600.1 | 6 | 22799545 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0349600.1 | osa-miR5797 | Cleavage | 4.5 | 15.86 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR5797 | Cleavage | 4.5 | 18.229 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR5833 | Cleavage | 4.5 | 24.817 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR5834 | Translation | 5.0 | 12.072 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR164b | Translation | 4.5 | 17.716 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR399h | Translation | 4.5 | 15.882 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR160f-5p | Cleavage | 5.0 | 20.267 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR164a | Translation | 4.5 | 17.716 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR164d | Translation | 4.5 | 17.716 | 1 | 21 |
| Osa06LNT0349600.1 | osa-miR164f | Translation | 4.5 | 17.716 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0349600.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0349600.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0349600.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0349600.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Osa06LNT0349600.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0349600.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0349600.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0349600.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)