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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0357700.1

GTGCAAATATAAAAAACGAAAAGTTGTGCTTAAAATACTTTGGATAATAAAGTAAGTTTACAAATAAAATAAGTAATAATCCAAAAAAAAATTAAATAAAACGAATGGTCAAACAATACGAGCAAAATGTTAAAATCCCGGGACGGAGGGAGTACCATTACAGGAATAACCGGGGTCCCACCTGTCGGCGAAAGAGAGCAAATATCTCTTCTCCTCCCGTCCTCCGTGTCCATATGCCATGCCATTGCTGCGTGCTCCTGTACGCGCGTGTCGTAGTAGCTAACTCGGCTCGCCCCCACGCGGAACTCCGCGCTGCATCCAGGACCATCTCTCTCATCATCGATCGTGCTTGCTTGGACCCCTCACAGCCATGGCCCCCATCTCTACCACCCTTCCTCTCTCTCTCTCTACAATGGTGAAGGTGAAGGTGCGTGTGTGTGTACGACGACAATGGCGGAAAGGACTGGCTCTTTGTGGGGAGGGTCAAACACGCAAACGCTTAAGCTTCTTCTTTTTCTTCTCTCTTTCCATGCTGCTACTGCATTGGCACGTACTAGTGGATGGAGTGGGGGAGTGGATGGAGAAGAAAGCTATGCTTTGGAATTGGAATTGGGGTGTGATAAGCTGTACTAGCAATGTTAGTTAGTTGCCCTAGGAGAAGGAGAGAGGCTCTTGGGATTGGGTCTAGAGTAGTACAGTAAGCAGGAAATATCAGAAATGGTGCTAGGTTTTCTGGGTACTGCAAATGAAATGAGCATCTCTTTCTTTGCATGGTGTAAATCGGGTAAATAAATCTATATGCCAGAGTAGTTCATCACTGCTGAACTTTGTGCAGTAGCCTTAGATACGGTAATATATATATAAGCAAACAAACAGTGGGCTAACTATATGTGGCACGTCTAACTTGAAGCGCGGCAAGAGGAGGCCATCCAAACAGGCCCTAAGTCCCAATTTCCAAAGAGTACTCAGAGTTACGCCTTGTAATTTAGTGGGGTAATTAATTTGGACCGATAT

Coding Potentia
Explanation CPC Score
noncoding -1.16697
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0357700.1 6 28174040 A G
Osa06LNT0357700.1 6 28174097 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0357700.1 osa-miR530-5p Cleavage 4.5 15.922 1 20
Osa06LNT0357700.1 osa-miR535-3p Translation 4.5 21.278 1 21
Osa06LNT0357700.1 osa-miR818f Cleavage 5.0 21.043 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0357700.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0357700.1 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0357700.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0357700.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0357700.1 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus