Transcript

Sequence

>Osa06LNT0357800.1

GATTTTGTTTCCCCTATGAGGTAAAAAGAAAATTAATGAACCCGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAAGAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCGATTATTTTGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAATTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTCTCAGGTCCTAAATAAACGCGGACACTTAAAAAATCTGTTGGGCAGGCGGATTCGCATCTCTTACAACCCACACAATCTTCGGTTCTTGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCATTTCTAATACATCTGTTGGACAAGCTCGTACACATTGAGTGCATCCTATACATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAAATTTTCCTTTTCAACATAAAAATTTTCGATCTGGTCAAAATGAAATTAGTACTATATCAATCAAATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAACAAATAATGCAATATATTTCTTAATCCGTTTGTGAGAAAGCATGAAAAGAGCCAAGAGACTTTAATTTTGGGCTTCAACAATCATAATTATACGAATTGTATATACGAATTCGAATTAGCCAATAAATTGGCTATCGTCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATTCAACTAAGTAAAAAAGAATACTATGGAATAACC

Coding Potentia

Explanation	CPC Score
noncoding	-1.42512

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0357800.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0357800.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30
Osa06LNT0357800.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0357800.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0357800.1	6	nan	Morphological trait	Root	RM4447	RM5509

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus