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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0358100.1

CTCAGAAAATTGCGAGAACAACTGATCAAGTATACAATTTACCACTCATCTCTAGATCACAATGAATGTAGCACTATGGTGAACACAGAATTGCCAGCTAGCTAATACATACGGACAAATTAATTCTCTGTTTGGGGGGCAAATTAATGGCAGCGCCTCTCCACTAAAACAACAGAAATGGTATGCTACACTACTGCAAAATTGCTAATTTTGGATGTCAGGTTAGTTCCTATCAAGTGATCGAGACAATCATGCTTAGCCTGAAAATCAGATAGCTAGGGATCTCTTCTTACGCGTGTTAGTTTTACTATTGTCAGATATGTTGCTCATGGATCATAATCAGTAGAGCAGCTCGAGAATCCTTATTCCAGATATTTGCTCCGCTTTATGTACATGATGTGAAAAAGAATCTTGATTTTTTTTTCTGCTAATAACGCTTGAAGTTAAAGCTAGGTAGTTTTTGTCAATTTCTTGTAGCTATAAATTAACTACGGATTAACTAGCAGTGGGAGGCTTTATCCTTGTCCGTGGCATGCTCTTCCTTCTAAGCAGAGGAGATTCCATTGAAAACACAAGCAAGCTACCATCCTTGGTTCCTGCTAGGATGCACTCTTCAGGGGTCACAGATAAAGAAGTAATGGTCTTCCCAGCTCCATCATACCTCCGGATAATGTCAAGACAATGCATAGAATGCAGAACTATTTGACCATGCTCACCAGCACAAACCAAGAACTGTCCACAACAACTAAGTTCCATGCAATTGATGCGTCCACCGGATGCTGAAGAAGCAATATGTTTTCCATTGATGGAATACATGTGCAAGGAAAGGTCACTCTCAGAATAAAATACTACCCTTCCATGCTGCGACGCCACCAATTTTGACAAACCAATGCCCGAAGGATGCCGAATGGATCGAACATATCTTCCTTCACGCAGTGTATGAAATATACAAGTTCCATCTTTTGAACCACTGATGACAATATCCAGTTCTGTGCTAACAAATAAGCATGTTATGATGTCATCATGACCACAAAAGATATGAACCGGCCTTTCCATTACAACATGATCACTTGGTCTGCCACGAAATGCATGCCAGATCATAACAGTTGTGTCATAACTTCCAGTTGCAACCACATTTCCACGAGATGAAACTGCAACACAGGCAACAACATCCTTATGCTGCCTGATGCTCTGAACAATTCTTCCATCACTAAGAGAAATAATCTGGAAACTGTTCTCCCAATTTCCACATAAAATCAAATACTTATCACTATTAATTTGCATGGTTGCTAAGCACTGTCTTCCAAAATTAACATTTTCAGCCAGGAAAGTGCCAATTTTGCGGGGAGAAATAACATCTGAGCCAATTCCAAAGAAATGATCCTGTGGTCCTGAAAATGTAAAATTTCCACCAGATTGCAACTGTGTTGTCAACCACAGCTTTATTGACAGTATGAGTCCTTCATTCATCAGTATAACTGTATTGTCCAACAAGCCAATGAATAACAAAGCAGACATGTGGCTGATTGTACTAGAAACACTTGAAGTCAATGCAATTGACTGTGGTGCAAAATACAGAGGGTGAGCTATTGGGACAGGAGGCCCTCTTCTTGGATGTTTCACCCGGAAAATCTGGATTGGTGTCTGTCCAAAATTTGCAATCTGATCCTCGATAGCAGATTTCTGCAACAAGTCATCCATATTTTCTAGATCAACTGCGCCTTCATATGTAACGTAGTAAAATATGTTTGCTGCCTCAACAGCAGGTTGTCCACGCTGCTTGTAACCAAATATGAGGTCAATCCAGTGATGGAGATTAGAGCTCACATATTCACTTTCAAGAGCTTCTCGGTTGATATGAATGAATTCTTCTGGAGAGCCCTTTGCCCAAGGAGGGAGAACAACGTCACCTAAAGGTTCACCATCCTGCCTAACACCAAGATGATACGAATTTGAATTTTCAAGAAACTCAGGCATGTAAAAAAATTCAGGAATAAGCTCTTTGACATCACTTGTATTTGACAAGCTGTTTTTGTAAGCACTATCGATGCTCTGGAAGAGGCGATCTGCATGGTCAAACTTGCCACCCTGGAGGCTACGATGCAGAGTTGTAAAAGGCTCAAGCCTGAGAAGGTAATGAAGAACAATTCCCATGGTGGAGTAGTGAGATCCATAATAAAAACTTGGTATATCTGGGTCATCGAAATTAACATATCTATCTTCAAAAACCTCAAAGCGTTTTTCATCCAAAGCACCAATTGGCTTTGAAAGATCCCTAAATGTAGAGGACTTGTTAAAATCAAGCTTTTCTGATGTATAATCAGTCAGTACCCATGGAAATACAGGATACTGAGTTAAATCGTTGTAAGACCGTCCAGCAAGAGTGTTAAGAATCATCAGATACTCAAAGTTACTGATTTCCCTCTTGATCCATCTGTCCCTAGCATTCTCAGCCATTTCAAGTGCAACTCGTCTGTCAACAAATGAAATGACTCTACTTTTGCCTTTGGTACTTCCTTTAGGGAACAAGGCTTCATTCCTGAGGGAAACTAGGAGAGACCCTGCATTTTTAGCATCCTTTTGCGATGAGAAGTTTAAAAATATGGGTGCATTTGAATCGTCAAAGAATATCTCCGTTGCAGTATATTGTAGCAGGTAGCGCGTCCAATGAACTGCTTTTATCTTGGTTATGTTCCACCTTCTGTGATGTTTAATTTTGTTAGATTGTTTTTGCATCAAGACACCATTCGGAGTTTTGATCACATAGTCTCGGCCTCCATCAAGTCTTTCCACACTTCCTAGATCACTCTTGCAATCGGAATCCTCTATCTCTTTAAACTTGCTGAATACAGATGATCCTCCAGTTCCTTCAACCAAAAATTCAAAAGAAAAATGTAGAACGGTCCGAGTAATATCCAATTGTCCTGCTAGTTTTCTCTTTGGGGTTATAAGCACACAATGAACTGAACATAGCACCTTGGTATAATCGTTATCTCCATTATTAGATGCTGATTCTTTCTTATTCTGAACGGCAGTGCGATAATCTGATAAATCTGAGACATTATTTGGGTTTTGGTTCTCTAACAGACTACTCTGGGAAGATTCACCTGTATCATTGGTGTCTTCAATTGGTTCGTATGCATTGTCTTCAAAGATTGCTCGCACACCTTTCAGAAGGAAACGCTTCAGTTTCAAGGGAACTTTGGTACTTAAAGAACTTTGATCAACACAAGCCTCTGTACTTTCATTCCTAGAATATGAAGGTTGACAGAGGCGTTCATCAAACTTGTAGTTGCGCTTTAGCTTGAGTCGTCTCCGCCATTTATCCTCAGTCTTGTCAAGTTTCCAGTGAGTTACAACATCATTTGGAAAAGGGTTAGCAGACCATGGTCCCCTCTCATCAATCAAAGCTCGGGAAATATGTATCCACTTATCTGCAACAATTTGCTGATCCTCATCAAAAGCAAGCCGAAAAGCTATTTTTCTTTTGTCATCTGCAGAAAGAGCAGAAGTGATCGAAATATGTATGTTATCTTCAATCATCTTCTCCAGTTGTGTCTCTTCGGTGAAGTGCTCATTGAGCTTAGATTGAAGTTCGTCCAACTGACTTAAGCGATCAGCCTGAACTGCCTTCATGTGCTTAACCTCAACAGTGGCCGCAGCAAGTACACGGTCCTTCTGTACAAAATTAAGAATGAACCCGGTGTCTTTATTACTGTTGCCGATTTCCATAGAATCATCTCTGCCCAATATATTAGGAACAAGCATGGATTTTCCACATATGATAGTTTCAAGGATCAAGTGTGATAAAACATGGTAACGTGCGCCATCATCAAGTTGCCCATACTGAGATCTTGTAATGAGTAAAGACCATATTAAGAAGTGCAGCTTGTTTTTGCTTTGCTCATCTTCTGAAATAAGAACAGGAAGCAGTGACATGAACTGCAGAACACACTTAGATGCATTTTCTAATCCAGCTTTGCAGAGATACAGAATTACAAGGTGAAAGAAAACCCTTGGGAATATCTCTTCCCTCAACAATGTAGCTTTTTCAGAAAATCTATTTATTTTTGCACCTAATGCAGTACCAATACCTCCAGAAACAACAGCAGCAGCCATTTCTGTAGCAGGGACATTTAGAGATTCCACCAATCCACGTGCTCTTTGCCCCAACGATGGGACTTCAATATTTGGACCCTTTGGTAGCAATTTGTTTGGTCCTTTTCCATTCAAATTACAAATGAGATCCCAAACCTTGTCAAAGAAGTTCCACCAATCCTCACTTTTTTCATCCTCGTCAGCAAATTGGCAAGATTTCCAAGGAAAACTTTTATATTGGCTATGGCTTTCATCAATTAAAATTTCATTTAGTGTAGACTTAATATCATCTTTCCATTTAATACTGGATAAAGATTCCTCTGAAGGATTAGATGGAAACAAGAGCTTGATTCCTATTTGATTGAAAAGCAACTCCTGGATAAGCTTCAAAAGATACAAGACATTATCACAGCATGGCTGTGAAAGGATAATATTTTCTTCTGAAGATGTCTGTAGCAGGCTCCCAACAATGTCATCAAGTATGTCCCGCAGTAAATAGGAACTTGATAGTTGTCCCTGGCCAAATTTTAAAAGAAAATAGTTAACTGTATCTTCAAGCTGATGCCAGCCACCTTTTACAGCACTCAGGTAGTATGCAAGGACCAATGCATACAATTTCCTCACAAGAATTACTTCATCAATCTCCACATTGTCAAGCTCACCTTTAGAAACTAAACTGTACTCCTTCAATACATCAAGCTTTGTGGATGTCTCAAGCCAATAGTTCCAACTGTGCTCCTGATAAAATCTATTCAGGATTAGTTCAAAACAAGTAATTTACATATACCAAAGGAGAAAAAAAATACCATTAAAGCCTCAATGTTTGTAGGGTTTGAATCTAGCAAACCAATAAGTTCACTTAAGATTCTTATACGCGCTGAAGAATCTTGACAAGATTGCAAATATCTAAAAATGCAGACCAAGATCTGAGGAAGGAAGAAAGGAACCAAGTGGGAAGTGCTGCAACTCTTATTTTTGGACTGTTCAGACTGGGAATATTCCTGTAAGACCTTGATTGGACTGGTTCCACCAAGAAGGACATTGAAAAAAGCTGCACATAAATTATATGAAAGTGGAAATTTAAACAGCCTTTCAGATATTGTATAGAAAAATAGATGAGATGCTGCTGTTATTTCATTTTTTGAGTTATCAGACAAGGGTCTAGATTGCCCAATGGGTAATGTAAATAATTTTGCTCCTTTCTTCTCAGATGGAATACCAGCCATAAGCTTTCCAACAAGCTGAAGTCCCAACAATCTAACTGGCTCGGATTCCCTCTTAAGAAGATTGATGAAAATGCAGCAGCCACCAAGGCAATTTACGTGCTCCAAGAAAGATGATAAAACTGGGCCCTCTGAAAGAGCACGAATGATCATTTTCAGTATGTCCTCAACGCATGCTACATCTTGATTCCTCTCAAAAAGGGAAGCAAGGGCTCTTATATCAGCTAGACAAACTTGTAACTTTAAGCTCATTTCTGCTAAACTCAGAAGGAGAAGCCGAAGCTTGCAGATTTCCTCTATCTTAGGTCTATCTCCAACAACTTGCTTGTTACCTGTTCGCAACAAAGACTTGGAACCAACAGCACACCTACAATCTACATACTCCGAGTAATATTGGCACACAATGTCAATGATCCTAGGAAGTCCGCAAAGCAGTGGTAAAAACCTTCCATCAGTTTCAAAATATTTTAGCAAAAACATATAAAGATCTCTCTGCACTTCATAGCTTGAGTGTACCCATATTTGTGGATTCAAATAAATTTGTAAAATAGCATCTTTCAGCAGAACTTTTGACATGCCGCAGTTCCTTAGAACATCAAACATATACTTCAGTGCAGAAAGTGTTTCAATATTTAACAGCTTAGGTGTAGCAGACTGAAGCAAGAAGCCCATAATAGATAATCCAGAAAGAAGATACATCTGTTGTTGATTCGATACATTTGCATCCAGGACAGATGCGACAAGCTCAATGACCTCAGCTCGCAACTTGCCATTGATGACAGATGTATGACAAGATTGCTCACCATCAGTTACAGCATTGCAACTGAAGAGAGGAAAAAATACAGAGACACCACCAACACAATAAATAATATCCTGCGGCAAGTGTCGCGAGCATAACTTTGTTCCACCCATGATTGTTGCTTCAAATGTACTTCTGTCAGCACTATCTAGTGCAGAAGAGACACTGAATAGACTCCTACTGTCACTGGCCTGCGCGTTGAAACCAAAAATGATCTTTGATGAAATTCCATCTCTTGCATCTAGAATCCCCCTGTATAGTGAATCATCACCATGGAAAGAGTACATATAACTTGGTCCTAGATTATATATGCCTTTTATTTGTTCTGAAGAGAGAGCATCGGAAAACACATAAATTGGGCCCATTTGACCAGTAAAGGCAAAGGTTCTCTCATAACCAATTGAAATAGGTTGTTCACCAACAGGCATCAATTTTGTACCGATAGTGCAGTGAGTCATTGCCTCGTTCATTTTTGGGTAACTACACTTCTCGGATGATACTAGATTCCCATCCACATAACACCTCAGGTGGCTTCCTCCAGAGAAAGCCCTCCCAATTGTATGAGTAACAAAAAGGAATATCCATTCCTTTGATGGGAGTTTTAGTGGCAACAAAACACACTCACGTTTTTGATTGATAGACTCATATACTAGAGCACTTTTGCTAAGCACGGCTGAGCACCCCTTTCCATCTTCTGTGAAAAAAGAGAAGAGGCCCATCATACCATTTTCTGGGAAGTTTTCTACCCTTAACCAGCAGGAAAAGGATAGCCCTCTATTATAAGGCCATTGAAATGGTGATTTAATTTCTATACCAGAATCATGACCATCGAACTCAAAGAAAGCTTCTGGTCCCTTTTCCTTAAGCATGTGACTGAGACATGTCAAAAGCAAAGAACTATGCTTCTTCTTGGCAACAATCTTCCCACAACGTAAGAGTGCAAATATTTTCCGAATGTCCTTGCCACTAATACTGTGTGCACCAATTATCTGAATTAAGTCTGCAATTTGACCAACAGTATCATCCCTTTCCTCTACTGAGAACCAATCAAGAAGATAACTAAGCAGTCCTGCTCTGAAACAAGAAGTTCTATTTGCAATGGATTGCTTGAGCAACTGCTGCAAAACAACAAGCCCATAATGCTGAAGTGATGTGCTGCTCTTTTGTAGAATATTCAAAACTAATATAACCACATCTTCATTCTTTATTGTTGTTATCTCATTTATCTCAAATTTCCCATCAACCAGCATGCTAAGCAATGCATGTAAGAGTCTCTCGCTTGGGCTTGGCAACCATTTGTAGAAATCCAGTAGCAAGCTCTGCAGTGTTTGATAACCCACACCAACTAGCATTCTAAAGGAAGCCTTGGATGCATCATTTCCTTCAAGTAATAAGGTCAATGTCTCAAGAACATTAAGAACTAACTGCTCACCAGTTGCCTCATTGAATGTTCCATTCAACAAAGAGACAATATACAGAAAGCACCCTCCATCGCGAAATAGATTTTGATAGTACATGCGATCCATCATAATGATCTCTCTCATGTTGACCAGTAGATCAACCAACAATTCTGAGTTAACCTTTTCTTTTTCATTTGCTCGTGTGAAATTCTCTAAATATTTGGAGCATAGCTGTAACTTTGCTGCATGATCTTGTTTTGATGATGGAGGTAACCTGAATAAAGCAAAAATTTGCTCCAGTACATGCTTGCGGAAGTTCTTTTCTTGGAATAAGTTGAATAAACACTCAATACAGTCAGGATTGTGCAAAATTAGAATTCTTCCATAGCTAGATATGGTGACATATTCCTTGAAGAGGCTCAAAGCTAACTCTATACAAATAATAGCATACTCAGTTCTCTTTCCTGACGAACTCATTTCAATATTTTCTATCTTAGAACCATATCCACTGCTGATAACATCATCACTAGGAAAACAGCTGAAGTTTTGTAGTTCTTTTGCTTGTTGGCATGCAGCCTTAAGGACTCCAGTAATTACATCCAAGGATTTAAATGAAACTAGAGTTTGTTCTGTGGCGAGTTGTAGAATAACACGAAAACTTTTAAGAAGAATGCTGACCACCACAGGATCATAAATGCAGTGTTCAAGAGCTTCCAGCAGTGCTGAGCATTCTGGCAGGTTATATTTGTTTTCATTAAGCGTTGCAGCATACTCCAAGAAGGAAATGGCTTCCAACTGAAGAATGTTAACATCTGATAGGTATAAGCTTTCAGAATCAGTGGGTTCAGTATTACCGTTAATATCTTCATTTTGAACTTCTGCGACAATATGAAATTGCATGTCTTCTACAGATGACCCAAAGTAGAAACAATTCTCTGAGAATATTAAGTCCCATACACCTTCCTCTCGAAAAGCTGTGAGTAAAGTTGGTTTTGAAACAAGAACCATTCTGAATGTGCGAATCATGTAAAGCTGAAGGGTTTTGGCCAAAATCTTTATATGGTTTGGCAATTCAGTTTCACTAGTACAAGCTTTGATGCATAGGAAGACTGTCATAAGAACCCTTATGAACCATCTCACAGATTGCTCTCGGTATGCTGATGGGATAGATAAAGAGATTTTGTTGCAAGCAATTTCATTACGACAGTAACTTATAACCTTTGAAGGAATAATAAAAGAGCAAAGTGCATTGCTCAACTTTACAGAGTACTCCCTCCATTCGGTTATATCAAGAAAATAAATTGGGCCAGAAATCGAATCTAATGCAAGTGAAGGCCCGGTGTTATCCCTTTGCCGATGGAACTCCAGAATCATAAATGCAGGCCAACAAATGCAGTTTGCAAATTTGTGTACACGTCCATTTTCGCACAAAAATTGCAGATTGTTGACATTTCCAAATACTGCCTCACTTAGAATTTCCAAATATAATATTTGGAGCAGAAGAACTTCAACCCTTTCATCTTTTGGGATAGATGAATTCTTCAAAACTGAAAATTTACTTGAAGGGAGTCCTAGCCCATCAAGTAGAATTTCCAAACCACCAATGCTTCTAACATGATTCTGGGCACGGGTTCCAGATATAGTTGATCGCAAAGTGCATAATGTGATAAAATGAAGTGAAAGATCTGTCCACTGCTCCGAATTCAGTCTCTGAATGACCCGCAAAAGTTCTACTAACGAATTGACACCACCAGCTCCCATCACAAGAACAATAGCCCTTTGTTGCCAACGTTGAAGTGTATCAAAAATACCACTTTCTGAAGTGCTTGGAGTAACTGTGGCCAAATGATTTTTTGATGAGGCACACTTAGTGGAATTGAGAAAATGGGGAATCCTCAGGATAGTTGGCTCCAATTTCATGAAGTTGGAAATTATTGTAACTATGTATTTGAGCATATTTAGCATCATTTTTATATTTTCTACAGCTTGGCATGAGACGTGGTTATCTGCAGCAAGCAAACTGTTCTGGATTTTGAGCTGAGCAACTGCAGCTTTTAGTAGAGAAGTAACCTTCTTTACACCACCATAATAGCTAAATACTCTACAGTTATGCATGGAACGAGTCAAAATTGTCAAGCACTCCAAAACATGTAGCCGTTCAGTACTTAATCCCAGATCTCCTGGTTGCTCTGAATAGTTCGGAGAAGATTCTGGACTGTTGCCACTTTCTGCAATAGTTGATGTTATTATAGACATCTCCTGAATCAGGATAAGAATGACCTCAGAAGGATGCCCGTGAGAGCATCCTACAACTGTTTCATCAGATCCTTGTTCTTGATCAACCAAATGAATATTATGGTATGGTCCCCAATCTCTGAATGTTTGTACAAATTGTAAGACAAAAATTTGCAGGGATTTCTCCTTTTCAGCCTTATTGAGGGCATTCTCATACTTCTTCCATAGTGTATTTAAGACTCTCTCCTCCGTGCTATCACTGAAGACGACGCGGGGAGAGGGAGCGACGTCCTGGTCGGCACCATGGAAGGAGCCCTCGCGGACGCCGAAGGAGGAGGAGGGCACCGCGGGCGGCGCGGGCGGCGGCGCCGGCGCCTTGCGGAGGAGATCGGCGACGCCCCGCACGATGTTCATGGCCTCCGACCACCACGCCACGCGCGCCTAGCCACGCACCATCACCATCACCACCGCCACCGGCTCGCCGGAGATGACGATCGAAGAGGTGAGCAAAACCTACAGGATTATTCGATCCGAACCCCAAATTCGATCGAAAAAAATGCGGCCTCGATTCGGGAGCGAATGGGGAAATCGCGTGGATCGAAAATTTTCGTGGGTGTGTGATTGCGCGCGTGCGTCGAGCTCGCTCTCCTAATCGCCTATGTTTAGCCGCGAAATGGAAGTGGGGGAGGAGAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.786475
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0358100.1 6 28210882 G A
Osa06LNT0358100.1 6 28210923 T C
Osa06LNT0358100.1 6 28210959 T G
Osa06LNT0358100.1 6 28211025 G T
Osa06LNT0358100.1 6 28213785 A G
Osa06LNT0358100.1 6 28213816 C T
Osa06LNT0358100.1 6 28216974 A T
Osa06LNT0358100.1 6 28217277 G A
Osa06LNT0358100.1 6 28215338 G A
Osa06LNT0358100.1 6 28217317 C A
Osa06LNT0358100.1 6 28218805 G A
Osa06LNT0358100.1 6 28220127 G A
Osa06LNT0358100.1 6 28220170 G T
Osa06LNT0358100.1 6 28220474 T C
Osa06LNT0358100.1 6 28221187 T G
Osa06LNT0358100.1 6 28222768 G A
Osa06LNT0358100.1 6 28223496 G T
Osa06LNT0358100.1 6 28223589 T C
Osa06LNT0358100.1 6 28225781 C T
Osa06LNT0358100.1 6 28228880 A G
Osa06LNT0358100.1 6 28229024 A G
Osa06LNT0358100.1 6 28229073 C A
Osa06LNT0358100.1 6 28229285 A T
Osa06LNT0358100.1 6 28229774 A T
Osa06LNT0358100.1 6 28230534 T A
Osa06LNT0358100.1 6 28231258 A G
Osa06LNT0358100.1 6 28231788 C T
Osa06LNT0358100.1 6 28231864 T C
Osa06LNT0358100.1 6 28231890 T C
Osa06LNT0358100.1 6 28231950 T C
Osa06LNT0358100.1 6 28233693 T C
Osa06LNT0358100.1 6 28234025 T A
Osa06LNT0358100.1 6 28211923 T A
Osa06LNT0358100.1 6 28214005 A G
Osa06LNT0358100.1 6 28219168 C T
Osa06LNT0358100.1 6 28234004 A C
Osa06LNT0358100.1 6 28227140 T G
Osa06LNT0358100.1 6 28227142 A C
Osa06LNT0358100.1 6 28228184 A G
Osa06LNT0358100.1 6 28228225 A G
Osa06LNT0358100.1 6 28228237 C T
Osa06LNT0358100.1 6 28229010 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa06LNT0358100.1 DTM_#DNAt_MULE_japo_Os0205 Chr6 - 28227106 28228285 1179
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0358100.1 osa-miR5796 Translation 4.0 22.155 1 21
Osa06LNT0358100.1 osa-miR5796 Cleavage 4.5 12.944 1 21
Osa06LNT0358100.1 osa-miR5800 Translation 4.5 16.233 1 21
Osa06LNT0358100.1 osa-miR5827 Translation 4.5 20.401 1 21
Osa06LNT0358100.1 osa-miR5827 Translation 5.0 19.256 1 21
Osa06LNT0358100.1 osa-miR5830 Translation 4.0 13.188 1 24
Osa06LNT0358100.1 osa-miR1440b Cleavage 4.0 15.103 1 21
Osa06LNT0358100.1 osa-miR6248 Cleavage 4.0 12.793 1 21
Osa06LNT0358100.1 osa-miR6252 Translation 5.0 12.324 1 23
Osa06LNT0358100.1 osa-miR6254 Cleavage 4.5 14.533 1 21
Osa06LNT0358100.1 osa-miR7692-3p Cleavage 5.0 20.991 1 24
Osa06LNT0358100.1 osa-miR396a-3p Cleavage 4.5 14.227 1 20
Osa06LNT0358100.1 osa-miR396b-3p Cleavage 4.5 14.227 1 20
Osa06LNT0358100.1 osa-miR396c-3p Cleavage 4.5 14.227 1 21
Osa06LNT0358100.1 osa-miR156k Cleavage 3.5 16.342 1 21
Osa06LNT0358100.1 osa-miR156l-5p Cleavage 5.0 7.729 1 21
Osa06LNT0358100.1 osa-miR167e-3p Cleavage 4.5 16.162 1 21
Osa06LNT0358100.1 osa-miR167e-3p Cleavage 4.5 23.467 1 21
Osa06LNT0358100.1 osa-miR167i-3p Cleavage 4.5 16.162 1 21
Osa06LNT0358100.1 osa-miR167i-3p Cleavage 4.5 23.467 1 21
Osa06LNT0358100.1 osa-miR168b Translation 4.0 13.888 1 21
Osa06LNT0358100.1 osa-miR171g Translation 4.5 17.525 1 21
Osa06LNT0358100.1 osa-miR171g Cleavage 5.0 21.65 1 21
Osa06LNT0358100.1 osa-miR172b Cleavage 4.5 15.916 1 21
Osa06LNT0358100.1 osa-miR172b Cleavage 5.0 17.124 1 21
Osa06LNT0358100.1 osa-miR166i-5p Translation 5.0 10.152 1 21
Osa06LNT0358100.1 osa-miR166i-5p Cleavage 5.0 14.794 1 21
Osa06LNT0358100.1 osa-miR426 Cleavage 3.5 22.532 1 21
Osa06LNT0358100.1 osa-miR426 Translation 3.5 13.706 1 21
Osa06LNT0358100.1 osa-miR816 Cleavage 5.0 16.641 1 20
Osa06LNT0358100.1 osa-miR1442 Translation 5.0 12.158 1 20
Osa06LNT0358100.1 osa-miR1847.1 Translation 4.0 21.518 1 21
Osa06LNT0358100.1 osa-miR1847.1 Translation 5.0 18.842 1 21
Osa06LNT0358100.1 osa-miR1860-3p Cleavage 5.0 16.997 1 22
Osa06LNT0358100.1 osa-miR1866-3p Cleavage 4.0 14.123 1 22
Osa06LNT0358100.1 osa-miR1882a Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882b Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882c Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882d Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882e-5p Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882f Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882g Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1882h Translation 5.0 14.085 1 24
Osa06LNT0358100.1 osa-miR1320-5p Translation 4.0 11.398 1 21
Osa06LNT0358100.1 osa-miR1320-5p Cleavage 4.5 19.04 1 21
Osa06LNT0358100.1 osa-miR827 Translation 3.5 13.0 1 21
Osa06LNT0358100.1 osa-miR2096-3p Translation 4.5 14.142 1 21
Osa06LNT0358100.1 osa-miR2101-3p Translation 4.5 14.753 1 22
Osa06LNT0358100.1 osa-miR2122 Translation 5.0 20.036 1 22
Osa06LNT0358100.1 osa-miR2870 Cleavage 5.0 11.226 1 21
Osa06LNT0358100.1 osa-miR2871a-3p Cleavage 4.0 10.93 1 21
Osa06LNT0358100.1 osa-miR2871b Cleavage 4.0 10.93 1 21
Osa06LNT0358100.1 osa-miR2879 Cleavage 5.0 12.19 1 24
Osa06LNT0358100.1 osa-miR5080 Translation 5.0 17.977 1 21
Osa06LNT0358100.1 osa-miR5081 Translation 4.0 13.95 1 22
Osa06LNT0358100.1 osa-miR5081 Translation 5.0 19.785 1 22
Osa06LNT0358100.1 osa-miR5498 Cleavage 5.0 16.483 1 21
Osa06LNT0358100.1 osa-miR1437b-5p Translation 5.0 13.643 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0358100.1 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
Osa06LNT0358100.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0358100.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0358100.1 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0358100.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus