>Osa06LNT0358900.1

GTCACAACTGGTTCAATACTGTTTAATTGCACCATACAAATACTAGGCAACAAGGTCTGTTCACGTAATCTCAAAGTTCTCAGCTCAGCCAGTGAATCTGACCATCACCTTATTCAATTGATAAAGGCCTATATATAATGCTCTGGTTTTTTTTTTTGAACAGAAAAAACAGCACAGTAGTGCTTTTTCATTGAATATAGAAGGAGAAAATACAACCCCTAGGGGTAAAACAAAAAGATCTTTAGACTATACACTATACAGAGTGCGGGATGAGCTCGCACTCTGCAAATATAATGCTCTGGTTTTTACGTACAAGACAGCATCACGCTTTATTCTCGACACTTGTACTCGCTGCAAATGTGACGAGCTTATTTATACAGATCGACGCATTCCTGAACCTGTGAAGCGTGAACCATTCAGACCTGGTTGTAGTCGATGACGATCCTGCCGGCGTCGAGGTTGCCGATGGCGGCGAAGGCCTCCCTGGAGAGGTCGAGGGTGGAGGTGCAACCCGGCGACGGGCAGCGGTCGACGATCTTGACGGTGACCGTGCCGCCGTTGCAGGGGTTGGGCACGGCGTTGGTGCCCCTGACGCAACGCACCGTGTACATCCTCCCGCACGCCCGCCCGCCGTCCCACAGCCCGTCGCTCGCCGCCGCGATCATCGTCCCCTGGTCCTGGAACCCGTAGCACGCCGACGGGGTGTAAACGGTGTAGAAGGTGGCGGTCCCTTCGATGGCCTGCGACGCCGAGACGAGGCCCAGGAGCAGAGCTGCAGCGAGCAGGATGCCAACTCTAGCCAT

Explanation	CPC Score
noncoding	-1.03769

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0358900.1	6	28708068	G	A
Osa06LNT0358900.1	6	28708220	A	G
Osa06LNT0358900.1	6	28708272	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0358900.1	osa-miR5829	Cleavage	4.0	19.823	1	24
Osa06LNT0358900.1	osa-miR1864	Translation	4.5	17.855	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0358900.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30
Osa06LNT0358900.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0358900.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0358900.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus