>Osa06LNT0359300.1

GCAGACAGCGTGAGTTGTAGAGATTTTGTGTGATAGAATGAGAAAACGACTGTAGGATGCATAATAGTTGGTTGACAACTTTTCAGATGAAGGTTTATGCAGCATGAAGAATTGCTAACTTAGTCTGCAGTTGTGCACTATGTTATATTATGGAGCTGGAACAGCTCCTTTGCTCCCATGTAAGATTGTTCTCTACTATGCCAGGCAATTAGTTGCTCTCCTACTATTTCTGAAAAAAAAAAGGAACTGGGACAGCTTGTTTTTCTCACTGAAGGCTGAAAAATGCAAAAGGCTTGACACCTTTTCAGTGGTTCTTGTTCCCTCTATCTCCAACAATGAAGAGAGGATTCTATGAAGGCCAAATAAATCAGTAGCCATCCCTGAAACAATCAGAGTGATAGATCATCATAACCTATTTGTCTGCATGACTATGAAGGAAAGCGATTCATGATTGTTACTGATGCAAAACAAAATCTCAGGAAATTAAGCAAAGGGAATTCACATGATGATTCACTCACCTGAAAGC

Explanation	CPC Score
noncoding (weak)	-0.783057

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0359300.1	6	28989548	G	A
Osa06LNT0359300.1	6	28989856	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0359300.1	osa-miR444b.2	Translation	4.0	16.063	1	21
Osa06LNT0359300.1	osa-miR444c.2	Translation	4.0	16.063	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0359300.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0359300.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0359300.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30
Osa06LNT0359300.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus