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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0359400.1

GCTTAAATGAGTTATGTTTCAACAAGTATTTGTCGATGTTTGATACAAAGTTGCATTGCCACCCAAGGGAGTGGATAGGGGTGGTGCGCAATTAGCATGACAAGAAACCATCAAATGGAGATCAGAGGCTGGCTATAGCCTGAAAGTTAACCATCATCACAGGTTATTAGGTAGATAGTGCATCTACACCTTTCGAATGAGGAGGAACAGCCTCTGGTCCAGCTCAAAGCTAGCGGCACTGGAGGGGTCACCCTTGAGCATCATCAGAAGGCCACCAAACGATGCATAGATCTCCACTTTGGTGGCTTGACCACTGGAACTGTCTTCTGAGATCTTGTAGAGCTTTCCATGCATGACATAGTCAAACTTGTCAGCAAGTGTTTTTCTGCCAGCCTGCGTGTAGAAGCCAGTGTCCGGAGTTCCATCCAGATTCAGAGTAGGAGCTAAAACCATGGTGAATCTGTCACCAGCACGCATCGGATAGACCTCAGTAGCAACATCTAACTGCATGTACATGTCGAACTGCTCGCTACGAGCTTCGATGCGACTAACTCTGTCGAACTTCTTCCCATCAGGATCGAGCCTGGTCACAGTGAAGATATCCTCGAATAGGTGCTCAACCATTTTCCTCGGCGGCGGCGGCGGCGTGAGAGGTCGCGAGGGGAAAGCC

Coding Potentia
Explanation CPC Score
noncoding -1.1705
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0359400.1 6 29173342 T C
Osa06LNT0359400.1 6 29173619 T C
Osa06LNT0359400.1 6 29174194 A G
Osa06LNT0359400.1 6 29174701 A C
Osa06LNT0359400.1 6 29175141 T C
Osa06LNT0359400.1 6 29175295 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0359400.1 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
Osa06LNT0359400.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0359400.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0359400.1 6 nan Morphological trait Culm/leaf RG653 RZ140
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus