© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0360100.1
CATTGATACTATAATTGAAGAATAATAAACGATTCACTCTACAGGGATTTAGAGTACGTAGGGGCTGTAATTAACAAATGGAATGGCTGATTATCCCTGTTTCTTTCCTATATATATACATTTCCAAAGCAGGCTCTCGCAGTAACACTCAGCGAGCAATTACCAGCTACAATGCATGCACCTATTGTCACTTCCAGAGTTCCAGTCAGGCGCACCAAAAATACCATGGCTAGAAAATGACTAAATGGGTAAATTGAGTCATCTCACCCGAATGACAAAGCACTTTGGTGTTAGTGATTCTCTGCTTGTGTAATTTTATTCCTTCATTCATGGCGAGTTACTTCTGCAACTCTTTGCCTTACCCTCTCATTTACAGAAGCCATCCTCCTAGACTCGGACAGCTGGTTCTGTTTCCTTTCGAAACTTTTAAAATCCCGGCATCTTGGCACAGCACAATCTGATTGTCTGCAAGATTGGGAGTGGAGTCGAATTATATACCACATTCTCGCACATTGTTTACAACCTTTAGTTAGTCGTATCTTGCACTGCGCCCCATGATGAAAGAGTCCCTTAAGTTTTCGGCAGTTAGGGTATTGGCAATTACGAACATGACATGATGATGCATGCAGTGCAAGTTCAAGCCATACACGCACCTGCTGAACGTGCTTCTGCCAAGCTCCCTTGTTTTGAACATTACATTCTGCAGATGATGGATGGTTTGTTAACTTGTGATGATGATTGGCACCTCATGTTTTTGGTAACATGAAGCACACATATCAAAGTCTGGGCAATCTTTACAATACCACCCTTGACCATTTTCAATATCGCAATTGCAGACATTACATGTGGCAACAAAAGCTGGTCCAGTTGGATTATGAAGGTGGTATAGCATCATCATGGTGGAATGCTTTGCACGGCGGAGGGTGTCATATTGATAATGATACCCTTGACAAAAACTCAGGAATGCCTGTCTGGTGTCAAAGATCTCATTTTCTAAGATAATATCTCTGTCCTTGGTATCTTCAGAGACCCCAACAATTTCAACTGGGTGGAGTATATGCAAACATTTACTATTACTTGGGTGCCTCTCCTTCTCCTCAAGCCGCTGCTCTGCATTATAACACCTGTCACAAATATAAAAACTTTTGCATTCATTGCAGACCCAGCGTCTTCCAGACACCATAAAGGTACAACAGTGACTGCACGAATACTGCAAATGGACCATGATGAGATCATCCTTAATTGGGCAAATGATTTCTCCAAGTTTTTGCATCAGCATAGCCTCTTTTGAAGCATTCCCACTTAGATCAGTGTGGCCGGCAGCTTTTAAAGCTCGTTTTGTGATAATTTTATTTACTCTCCCCTTCTTCAGCAGCTTACCATCACCCTCTAGTTGAAGTTGGTTGATAATATCTTCTGCAGCTCCTGGCCAATAATCTCCATCAAAATATGGCAAGCGAGCTGCAGATACTTTTATCTTGCATTCTTTTGCAGTGACAAAAAATTGATCATAGAGATTTGTCAACTCGACAACAATGTTCTCCTTAATAGCCTTTTGAAGCATAGATAAGTACCACTGACGCAGTTTATCAGACTTTGGTGTCTTCTGAATCTCTGGATGGCAATACAAAATGTAATCTTCACCTTTAACAGGAGGGCAAGCCCATATATAACAACTGGTGAATCCACGCTGCTTATAGTACTCAAGATAACCTATCAGAATTTCATGGTACACATATGTCCTTAAGGCCTGCCCGGACACTGTTTCTATATCTGGTCTAAAGTATTTAACAGAATCAAGATATGACAGATAAACCCGACGTTGGTTTGGGAATTTGCATTCTGCACCATATTCTTGGACATACATGCCAAATAAGCATACTTCCACACCTTCTATTTTCTGAAATAAAAGAATAGCCTTAGACTTGTAAGGGAACTCAGCTGGATAATTGTCCTCTTGCAAAATCTTGAAAAAATGTGGTTTAACTTCCAGTTTCTTGTCCACTGATGAAACAACTCTGACCACAAGTCCATCTGCTCCAGGAACCTCATCCAAACTTGTCTTTAACTTATTTGCCCGTTCCTGTCTCTCCTCCCTGAGTCGTTTAAAAAGTCGTTCTTCTATATGATCGCTAAGCAGGGTCCTTGGCAGATCTTTGGCACCACGAACAACACTCTCTGGTAAAGGCATGCGCAAACCACGTTTAAACTCCTCAATATAACATTTGAAGCAAGTGTATTCTGCTTCTTCAACATCATTTCTTCTGGCATTGAAAAGTGCACAGATCTGATGTTGCCAGCATTCACATTTGTCACACTGAACCCACCCTTCCTCTGGTTCGTCACTGTTTCTCTTTTTCTCAAGATCTGCTTTTGAGAGTTTAATAAGCTCCACCTCAATTGTGTTGCCCAGAGATGCATTGTAACACGAGATACAGAAAAAAAGGCGACCCATAGCAGTAGACCCAGTATAATATGATGCATTTTGTTTTATCCGAGCACCACAAGGAGAACAATATATTGGTCGAGGTTCAAACGTAAGGTTTTCAACTTTGCAAAGCTGGCATAAGCTCTCACTTTCAGAATATCCTATCACTTGATTCTTTTCAGCTTTTAGCCTTACTCTGACCAATCCACTGCCTTAGACTGTTGATGTGTTCATGTATTTGTTCTGGAGTAAACAATTCCATGAGTGAAACACCTTTTACCTTTGGTTTCCCAGTTTTGGAGATCGTGACATCCACAGAGCCTGTTTTTTTCTTAACATCAACAACAGTCACACTCTCTTTATCAGCCACAACAGTTTCTTGCTGGACATGACAATGTATCTTGTTTAAAGCACCAGGAATAACAGTATTTTGCGCAGCACCAATTTTCTCATCACTACCATGACAGCTGACTAAAGTAACTTGTGGATGTCGGATATCAAGCCCCACGTCTACCTCTTGATCAGGGACCATCTTTTTGTTCTGATCAAGCTGTCTAGGATGGGCTTCCTGCAACATAAACCCTGGGTTTTTTTGACAGACAGGGACATTCTCAGATGCATCGGGAGACACAAGCTGCAACTTTGGACGCTTTGCTGCTGGTGGTTGGTCATCAAAGGTTTCAACTGCCTGGTCAATGTCCATTCTATCACCATGTACCCTATCGGCACTTCTTTGATTCATATTGTGCTGAGTAATAAGTATAGGTTCAGCAGGATTCTGTTTATGTGCCAGTTCAGAAGAGCGACGCAACATTTCTTTTGCTTTGCAGCAAACATGACAATGCTCGTTAATACAATTCTTATAGTGATCAGATACCATCTTTGACTCCCTACAGTGTCGATATGAACAGTCCTTTATTTGACAGTCCGTCAAATGAACCACTAACTCCCGTACACGATCACAATATGAAGATTTACAACTTCCTGGAGGAGATGTACATGATTTTGCATGGAACAAAAATAGTAACCAACGTGCCTGGGCATGGTATTGTTTAGTGTTTTCCATGACTTCTTCAGATCCAAATGAAGTCGCAGCGCAGCCAGCACTGTGCCAACCAGATATAATAGGATGATGTTCTCTATCTCGTGCCATTTTTTTCTGACAAAAACCATCCTGGATCTTTCCACTCAGCAAACTAGTCATGATCACTTCTTTCATTGGTTTTGATTTACAATGTGGTTGCAATGGTTTAGTGTATGTTTCTTTCAAGAAACAACTCAGACGGTATGAACCATCATCGAATTGCTGTTGTGGAGGCAACAAATCATGAGGGGCTGGGATACCAAGGTTCTGAGAACTGGCAGACATTTGGCCCTTTTTGTAATTATCATGATATTGTGTTTGCTCATAATGGCCCTGGAGATTTGTCAGGCCAACATGCTCGTTTATTTGTGAAGACACCAGTTCACTGTGCAATTGATTTCTCTTGTCCAATAGTTTCTCAGCATGATCAGAACCAAGATGGCATTGCGTCAATACATTTCCCCTCGACATAACAAGATGATGCAGTGAATTTTGCTGCTGGAGCTTTAAGCTACATTGGTTCTGCGCATACTGGGAATGAGGCTGAATAAGATGCAGCTGATTCACCTGCTGATGCAGCTGTTCAAGAGAAATCTTTTCTTGCAGATCCAATCCTTCAGTTTGTATATAATACTCTGTTTGAAAGGACTGGATGGTTGGCTGACTCATAATCAACCCAGAATCCATTCTTGATTTAGGCAGCGAATTTACAGTAGTCATATCTAGATAACTCGTAGTTGATAAGGCAGAAGAACCGGTGCCATTAAAACTTGTAGAGGCAGCTATATCTGCAGGAGTTGGTGTACTCCGTGTAGAAGGATTGACATGTCGCTGCAAAGGTTTATTGGGGGAAATTCCATAAGGAGATGGGTTAATGAATGTTTCTGGTACCACAGTTCTGTTTATGACCTGCACATTTGACCTATGTAACCCCATACCATCAATCATATGTGCTTCCGATACACCATACGGGGATGAATTGTTCAGTATGTCAGAATGTACCCCAGAACCAGCATAGCCACCAAGATCACGCTGCACTGGACAGCAATTAATTTTACTAGCAAATGGCGCCTGCTGCTCCTGCATTTGTGCCATGACGTTTGATTTCCCATTCAAGTATCCAGTTCCAGTTGAATAATGAAAATTGCCAGGTAAACTTTGTTGATTGCTAGATCCTGGTGTCGGGATCATATGGGTTATCTTCCCTTCTTGCATGCTCACTGCACTCATCTCTAATGAGGCACCCTTAGTGGTGGAATGTAGTGGGAAATTGGCGGAGAAGTGGTGGTGTCCGTTAGACATGGGACCACTTGTGTTGTCCATCTCATAGAGCGCTCTAGTATTTCCACTTGCATTCTGAACCACATCAGGTATTGGAATTGTTGTGCCATAACTGGAAGAAGATGTTAATTGCTGCAGCATTTGTTGACCTTGCTGATGTTGAGCCATATGGGTACTAAGAGCATGTTGTAGATGTGGAAAGATTTCTCCATTCAATATACTATAGTAGGCAGCCTTATTTGGATTCTTCTTGTATATAACTGCCTCAAACCGTTTTGCCAAGTCTGACACCAGTTTTCTAGGCCTTGTTTGAAGCTTAGGTTCCCTTGAAAGTAACTCCCAAATCCTGTTGGTCATGCGTATACGCAAGTTCATTAACTCAGGATCCGCACTAGCATGACCTGAAGCGACCTGATGCCGCCCATTGCCATCGCCATCGCCCGGATTCATCTGCGCAGTAGGATGATGGCCTATCCTCTGCCCAGAGAGGTGAGCCCCTTGCCCCTGCTTCATCTTATACCCATCAACGCATCAACTTAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0360100.1 | 6 | 29776228 | A | G |
| Osa06LNT0360100.1 | 6 | 29771312 | T | C |
| Osa06LNT0360100.1 | 6 | 29769660 | T | C |
| Osa06LNT0360100.1 | 6 | 29769733 | A | G |
| Osa06LNT0360100.1 | 6 | 29770505 | A | G |
| Osa06LNT0360100.1 | 6 | 29770917 | G | A |
| Osa06LNT0360100.1 | 6 | 29771328 | A | C |
| Osa06LNT0360100.1 | 6 | 29772889 | T | C |
| Osa06LNT0360100.1 | 6 | 29773351 | C | T |
| Osa06LNT0360100.1 | 6 | 29773722 | T | C |
| Osa06LNT0360100.1 | 6 | 29773895 | C | A |
| Osa06LNT0360100.1 | 6 | 29773960 | C | T |
| Osa06LNT0360100.1 | 6 | 29774106 | C | G |
| Osa06LNT0360100.1 | 6 | 29774249 | A | G |
| Osa06LNT0360100.1 | 6 | 29774398 | G | C |
| Osa06LNT0360100.1 | 6 | 29774845 | T | C |
| Osa06LNT0360100.1 | 6 | 29777100 | A | T |
| Osa06LNT0360100.1 | 6 | 29777734 | T | A |
| Osa06LNT0360100.1 | 6 | 29778536 | A | G |
| Osa06LNT0360100.1 | 6 | 29778593 | T | C |
| Osa06LNT0360100.1 | 6 | 29780122 | A | G |
| Osa06LNT0360100.1 | 6 | 29780416 | T | C |
| Osa06LNT0360100.1 | 6 | 29769879 | G | A |
| Osa06LNT0360100.1 | 6 | 29771284 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0360100.1 | osa-miR5525 | Translation | 4.0 | 20.559 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR812r | Translation | 4.0 | 21.881 | 1 | 24 |
| Osa06LNT0360100.1 | osa-miR6251 | Cleavage | 4.0 | 17.905 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR162a | Cleavage | 4.0 | 19.034 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR319a-5p | Cleavage | 5.0 | 18.746 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR162b | Cleavage | 4.5 | 19.034 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR164c | Cleavage | 3.5 | 17.937 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR166k-5p | Cleavage | 5.0 | 12.849 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171b | Translation | 4.5 | 13.23 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171c-3p | Translation | 4.5 | 13.23 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171d-3p | Translation | 4.5 | 13.23 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171e-3p | Translation | 4.5 | 13.23 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171f-3p | Translation | 4.5 | 13.23 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR172a | Cleavage | 3.5 | 16.566 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR172a | Translation | 5.0 | 19.043 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR172c | Cleavage | 4.5 | 16.566 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR171h | Translation | 4.5 | 18.838 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR172d-3p | Cleavage | 3.5 | 16.566 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR172d-3p | Translation | 5.0 | 19.043 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR416 | Translation | 4.0 | 14.439 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR812a | Cleavage | 5.0 | 18.185 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR812b | Cleavage | 5.0 | 18.185 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR812c | Cleavage | 5.0 | 18.185 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR812d | Cleavage | 5.0 | 18.185 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR812e | Cleavage | 5.0 | 18.185 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR169r-3p | Cleavage | 3.5 | 18.533 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR1852 | Cleavage | 5.0 | 16.519 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR1852 | Translation | 4.5 | 16.179 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR1860-3p | Translation | 5.0 | 22.162 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR2100-5p | Cleavage | 5.0 | 21.782 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR5071 | Translation | 5.0 | 17.883 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR5147 | Cleavage | 4.0 | 20.916 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR5149 | Cleavage | 4.5 | 12.504 | 1 | 22 |
| Osa06LNT0360100.1 | osa-miR5485 | Cleavage | 4.5 | 20.083 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR5524 | Cleavage | 4.0 | 14.103 | 1 | 21 |
| Osa06LNT0360100.1 | osa-miR812o-3p | Cleavage | 5.0 | 17.69 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0360100.1 | 6 | qREP-6 | Resistance or Tolerance | Other soil stress tolerance | nan | nan |
| Osa06LNT0360100.1 | 6 | nan | Morphological trait | Culm/leaf | RG653 | RZ140 |
| Osa06LNT0360100.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)