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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0361500.1

ACTTAATTACCGCTCGTATTCCAGAACAAATGCAGCACCATGTGCATATGGGTAATAAAATGCCATTTAAGGATCTAGGGCTGATCATTATAGTTCTTTGTTTATGATGGTCCGAATGACCAAACTAGGACTAGAATGTAGTAACTTTATTTAGGGTGATAGGCTTGATATGTTGATACAAGGGCAGAACAGTACCAAGAGTCCTTTTGGCAGAGTAGTACCAATACTCATTATGCAATATACTGTTTTGTGTGAGTTTCAGACAAACGTTGTGTTTCTGACTGTACTTGCAAAAACAAAACCTGAACTTTGTTAACAGAATAAAGACACCTCCACTAAAATGTCGACGACTAATGCATAAAATTACTTGCATTCTTCGTGAAAATTCATAGCAGTAAATGTGTCGTCACTCTTGTTTCCTTGTCATTATGCGTGTAATATATTTTGCTAGCATGCATTTAAATATGAAGTAATTAATCAAAGTGCATTCGTACCATGTCAAAAGAACAAGAGAATAGAGCAAGTAATAATAAGGTAGTACTTGACCAAAGCATACTTGAAAAAGTAGTATATTGCTTTAGGTTTTGCTTTTCCTGTTGTACTCAATGTGGACAACATGAATGCTCTTCCTCTTGAGTACTAATTCTTGCTTCAAGGACATTTTATGAGATAATAGCTATTTTATTTGATGTAGACACAAGAGTTGGACGACCTGAGGAGGATGCAGAAGCCGCCGAGTAGAATGTGCGAACCCAGTGACATATATGCATCATACTGCAGCCTGCCTGGATGCAAATATTATCGGATCAGTGGTTTGTTG

Coding Potentia
Explanation CPC Score
noncoding -1.3191
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0361500.1 6 30619422 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0361500.1 osa-miR5533 Cleavage 4.0 21.168 1 21
Osa06LNT0361500.1 osa-miR5828 Translation 4.5 21.898 1 21
Osa06LNT0361500.1 osa-miR1861b Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861d Cleavage 4.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861f Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861h Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861i Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861j Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR1861l Cleavage 5.0 24.936 1 22
Osa06LNT0361500.1 osa-miR5486 Cleavage 5.0 16.927 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0361500.1 6 nan Morphological trait Root RG653 RG433
Osa06LNT0361500.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus