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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0363300.1

ATAACCTTGAAGTATTTGAATATGATATAGCAGACAGCCAGTCCGTTGCTCTTTATTTAAGGGGTGTGAAAATCCAAAAAATAAAGAAAGAAGAAGAAGAAGAAGAGAAGAGAAGAGGAGAAAATGAAAGGAGAGAAGATCGATCGAGGGCCTGAAGTATCCATGGCATGTATGCAATCGTACACGTAGAGATGTGATGTGACTGGATCGGAGCTAGACAAGGAGGGGCTTGCCGCGGCCCATGGTGAAGCCGCGGGTGCCGTCGGGCATCCTGGGGCCGTGGGCGTGAGGAGGCGGCTGGCGTGGGCTGGAGGGGCACTTGTGGCGGGGGCTCGCCGGCAGCTTGTGACGAGGGCTCGCCGGCTCGAAGTGCCCCACACTGCCGGCGGGGGCCGACTGCGGGCTGTGCGGCGCCGCCACCTGCAGCTTCCCTCGGCCCCCTCGCGCCCACCCTCCTCCTTTCTTGCTGCTGTTCATCATCTGCTGCTCCCCGCCCTGATCGTGACCCGCCGCCTCCGCCGACAACTCCGCCGCCGTCGCCGTCGCCGTGGGGGATAAGTCCGACGACATCGGTGACTGCTCGTCGTCCGAGTTGAGGTCGAACTCCGTCCGCTTCAGCCTCATCACCGACTTGGGCGATCGCCTGAGGACGGTGCGCACCCGAAGGCCTTTCCTCCAGTTCCGTTCGTCGTTCAGCTTCTCCACTGCTTTCTCAGCTTGCTGCGAGCTCTCGTACTCCACCAGTGCATGCATCTTGTTACTGACTAGAGTGTCTGACTTGGAAGCTCTTGCCGTGCTAGGCTCTTGAGGGTGGCACATCTTTATGTTCTTCACACTGCACATGCATGCCGGCCCACCCCATCGATCGATTTTTCACATATATATGCACGCCAAGTAGTAATATAATTTATTTCAACAACGTAGTAGTAATATAATACACACAAAACAATACACTCGTATACAATGTGGGAAGCATGCAACACGACTATCTGAGGCCCGGCGGCACTTCCTGACCTTCCAACGACACCGAAGATTTTCTCCAGGCTGTTTCTCGATGAGTCCTCTGGCAAATTCTCAGCTATGATCATCCTTGACTGAAGCTCCTCCTTGTGCTTCTCCGTGAATGGCTGCCTCCGCCGGACTTTCTTGCCGTCATCACTCACAATCAGCTTGGTGGAGGTGCGAAGAGCCTTGACCAGCATTTGATTGGTTGCTCCAAGAGACTTGATCTTCTTCCAAGAAGCAATCACGGATAAGGGGACGTAACCTTCAGAATCTTTGTTCATGATCTTGAGCAAGAACTCGTTGGCGACGAGGTTAATGTCGCTGAATTGGTACTCGACCTGCTTGACGATCTTGTGGGGCATGTCGGCGGCGGAGGTGGGCTTGGGCTGCGCGCTGGCGGCGGCGGCGGCGGCGAACTTGAAGTCGGGCATGAAGAAGACGGGCTCGTGGTCATGGAAGAAGCTCCAGTGATCGGGCTGCACGTGGAGCCCGAAGGGGGAGTAGAAGCTGCTGCTGCCGGCGGGCGCCGACATCGGACTGGCCGTCGGCGACATGGCAGGCACGAACTCCGGCGCGTGCACGTTGAACTTGAAGGCCGACGACGGCGTCGACGCCTCCTCAACAACCACCACCGCCACCTGCTTATTATTATTATTGTTGCCGTCACCACCGCTGCTGATGCTCTCCTGCTGCGCCGTCGCCATGGATGATCGAAGAATTCAATTGAATTGAATTAATATTGTGTCTGCAGCTTGGATCGACCGATCGATCGATAGCTAGCGAAGCGACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.598147
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0363300.1 7 156563 T C
Osa07LNT0363300.1 7 156650 G T
Osa07LNT0363300.1 7 156266 C T
Osa07LNT0363300.1 7 156422 A G
Osa07LNT0363300.1 7 156749 T C
Osa07LNT0363300.1 7 156803 T C
Osa07LNT0363300.1 7 156924 T G
Osa07LNT0363300.1 7 157033 A G
Osa07LNT0363300.1 7 157449 T G
Osa07LNT0363300.1 7 157976 A T
Osa07LNT0363300.1 7 157989 G A
Osa07LNT0363300.1 7 158556 C T
Osa07LNT0363300.1 7 156083 A G
Osa07LNT0363300.1 7 157576 T C
Osa07LNT0363300.1 7 157168 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0363300.1 osa-miR5179 Cleavage 4.0 20.642 1 21
Osa07LNT0363300.1 osa-miR2098-5p Cleavage 3.5 18.741 1 20
Osa07LNT0363300.1 osa-miR2102-3p Cleavage 5.0 20.716 1 22
Osa07LNT0363300.1 osa-miR5507 Cleavage 5.0 9.134 1 21
Osa07LNT0363300.1 osa-miR5513 Translation 5.0 20.173 1 21
Osa07LNT0363300.1 osa-miR5522 Translation 4.0 8.686 1 21
Osa07LNT0363300.1 osa-miR171c-5p Translation 4.5 18.03 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus