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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364800.1

ATCAAGTTACAATCTATACCATATTTATATCCGCAAAGGAATACAAAATTGGGTTAAAAATGGTTGTTCTCTACCATTTTTATATCCCAATGGAATACAAAATGAAGCACCAACATGCTAAAAATGGTTTTCTATTTCAGGGTGGAGGATGGCATGTAAGTGGTTATTGTTTCTTGCGTCTATTGTACAGCTGTATAGTATGCCACCATTTAACATGTACTTACAACTCCCTGTGTCAGCAATAGAACACATCTAGGGTTGGTTTTGTTTTGTATCATGGAGATTCCAGAAAGGAAAGCTGCAATGGTGCAGCAGCGGCAGTGATGGTGGCTGATCCTTGTAGGTGGGGAGGACTGCACCAGTGCACCCAAAGAGAATGGAATTTCGTGCTGTCATTTAACTCCCATCTCACAGACATAAAGAGACGAAGCTGATGTCAACACACAATCTCCGAGCTTTTTCAGCTTTCTCTTGCGAGCATCCGCGGAGAGGCGAGCCTTACCAAGAC

Coding Potentia
Explanation CPC Score
noncoding -1.23398
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364800.1 7 2029680 A C
Osa07LNT0364800.1 7 2030278 C T
Osa07LNT0364800.1 7 2030370 A G
Osa07LNT0364800.1 7 2031607 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364800.1 osa-miR172b Translation 4.5 19.622 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0364800.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus