Transcript

Sequence

>Osa07LNT0368400.1

GGTATTTTCTTTCATTGATACAGAAATCTATACATCAATATCAATTCAAGGATATGCAATGACAAAATAATGGCATTAGTTGATGATAGATGAAAAAAAATGTTATTGTACAGTTCACATGTGAAGTGTAACACATTCACATTAGCAAAGAGAAAATTCTTGACCAAACTTAAGTTGTGCCCACACATACCGTATATTGGTT

Coding Potentia

Explanation	CPC Score
noncoding	-1.36015

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0368400.1	osa-miR5509	Cleavage	4.5	13.137	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0368400.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0368400.1	7	qSNC-7	Resistance or Tolerance	Salinity tolerance	C1057	R2401
Osa07LNT0368400.1	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0368400.1	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0368400.1	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0368400.1	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus