Transcript

Sequence

>Osa07LNT0378200.1

CATCAGAGAAATTCACTTTGTGCTGACAAGCTAGCGATGAAGCAGTGATGTGTTTACAAGGAAAGCTACTAAAAATAACCCTACCTTAGCCCTAGCAGTCTAGCCTTTTTTTTTTTTGAGGGGATTTAATCTCTAGCTTAGCAGAACCAAACATGCCCATGTGATGTCATCCCAAATAAAGCTGACCGGAATCACATTACAACAAGGTCTTAGCATAGGAACAATAAGCAAATCTGCATGTAAATATGATTCAGCAGAGCAGTTCATGTTCAGGAGTTCAATGGTTGCGGTGATGCTTCAGGCTTGATCAAGCTTCTGCAATCGAGATTTCGCCATGTCCAGTTGCTTCTGCTCAGACGTGACCGCAGATTTGACGCTCTTGCGGAAGAAGAGGTTGCAGGTCTTCTGGTACACCGCCCGGGAGGGAGGCAGGTTGTTGAGCTCGCCGATCGCCACCTCGTGCGCCCTAATCTCTTTCATGAGCTGCACCTTCTTGTCCACCTCCTTCGCCGCCGCCGCCGCCGGTGTCGCCATGGGTGTCACTCT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.980004

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0378200.1	7	15618554	C	T
Osa07LNT0378200.1	7	15618808	T	C
Osa07LNT0378200.1	7	15618895	A	G
Osa07LNT0378200.1	7	15619256	T	C
Osa07LNT0378200.1	7	15619368	T	A
Osa07LNT0378200.1	7	15619507	T	C
Osa07LNT0378200.1	7	15619512	G	A
Osa07LNT0378200.1	7	15619569	A	G
Osa07LNT0378200.1	7	15619857	C	A
Osa07LNT0378200.1	7	15621573	G	C
Osa07LNT0378200.1	7	15620550	T	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0378200.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0378200.1	7	qah7	Physiological trait	Flowering	R2401	C1226
Osa07LNT0378200.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0378200.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0378200.1	7	nan	Physiological trait	Flowering	R2401	R1440
Osa07LNT0378200.1	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0378200.1	7	hwd2	Physiological trait	Lethality	nan	nan
Osa07LNT0378200.1	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0378200.1	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0378200.1	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus