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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0380800.1

GGAACCAGAAAACTTCGACTTTGTAGGCTCGGAGAAAAATATTCACTATTACAAAAATCCATGCAGGAGTCAAGTTAAAAGAAGAAACAGGGTTCTGTCTTTGAGATGGAGTATAATTTATTTAAGATCATTCCCTCCATCCCATCATCCATGAGTTTGCAAACTTCAGCTCACATTCTAAAAATGAAGATGCAAAAGAGAGAGAGGGACAGCAACTTAAAAACGTATTGATCAACCAGCCAAAGCGGCATTGAGCGCACTGTGAACATCCACTCCAATCTGAGCTTCGGCCTTCTCCAGTTCAGTTGAGGCCGATCCAAGCTTGGCGTTGAATTCCGCGAGACCCTGCTGGACCGCGGCTGGGTCGATCTGGTCCAGGGGGACAGCCTCAACAGCCACGATATCAGCGATGGAGTTTGCATGGACAAATGCAAAGCCACTGCTCACAAAGTACTTGGTGATATCGTTTCCCTCGTGTACCGAGAGAACACCAGGCTTGAGCTCTGCGATTGTGGAAACGTGGCCTGGCAAAACACCCATCTGACCAGTTGTTGCTGGTACAATTACCATGTCAACCTCCTTGTTGGCGATCTCGGACTTGTAGGGGAGGACGAAGTTGACGGTGAGCTTGGAGGGGATGGCCGCCGGCGTGGGGGGGCGGGGCTGCATGAGCGACATGGGCGTGGCGGGGGCCTCGATGTTGGGGGCCACCTTCTTCCACGCCTCCGCGAAGGCGGAGTCGGTGGCCGCCTCGGCCGGCACCTCCGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.895113
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0380800.1 7 18535251 A G
Osa07LNT0380800.1 7 18536635 T C
Osa07LNT0380800.1 7 18532630 A G
Osa07LNT0380800.1 7 18533730 C G
Osa07LNT0380800.1 7 18535316 T C
Osa07LNT0380800.1 7 18535323 T G
Osa07LNT0380800.1 7 18535331 T C
Osa07LNT0380800.1 7 18536229 C A
Osa07LNT0380800.1 7 18538512 C T
Osa07LNT0380800.1 7 18539293 T A
Osa07LNT0380800.1 7 18540677 A G
Osa07LNT0380800.1 7 18540609 G A
Osa07LNT0380800.1 7 18537413 G A
Osa07LNT0380800.1 7 18539884 T C
Osa07LNT0380800.1 7 18535752 T C
Osa07LNT0380800.1 7 18536097 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0380800.1 osa-miR319a-3p Translation 4.5 22.114 1 21
Osa07LNT0380800.1 osa-miR1436 Cleavage 5.0 13.494 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0380800.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0380800.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0380800.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0380800.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
Osa07LNT0380800.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0380800.1 7 sp2(t) Morphological trait Panicle/flower nan nan
Osa07LNT0380800.1 7 dth7.1 Physiological trait Flowering RM125 RM336
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus