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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0382600.1

TCCCGCACAGGTGCGCGGCGCGGGCGCCGCTTCCTCCACTCGCGTGCGCCGCTACCTTCTCTCGCCCGCGCCACTGCCGCTTCCAGACATGCGCGCCGCCTCCTCCTCTGGCCCGCGCCGCCCTACAGAAGCGCGCGCCGCCGCCGCCGCCTCCTCTCGCGCGCGCCGCCGCTTCCAGACACGCGTGCCGCCTCCTCCTCTCGCCCACGCTGCCTCCTCCTCTCGCCCACGCCGCCCCCTGCAGACGCGCGTGCCGCCTCCTCTCGCGCGGGCCGCCGCTCTCCTGCTCCCTCCGTCGACGCGCCACCGGGAACCGCCAACTTCGTGCTGCCCGGCGCCTGCAGGCGTCGATGTGGGCGTGGGAGATGTCGTCGCGTGGCCAGGAGCGGGGTAACCACGGGGAAAAGTTCACCGCGCGGTGATCGGGGCTGGTGAAAATATAGCCCCGTCGTGATTGACGGGGGCGGGGACGGTGAAATTTTATCACCGTGGTGATGGGGACGCGGGTGTGACCCCCGACGGCGAATTCACCGTTGCCATCTCTAGGCACAGCGTCCCTTCCTGCCCCATCACGCACGCGTTCTCCGGCTTCAGCGCCGCCGCCGCCACTGCCGAACTCCAGCGTCAAGTCCGGACTCACCTGTTCGGTTTGCTTCCTACTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAATATCATCGGAGTGTTATACATAAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGAGTCAAGTAATTTGATCTCTCACAGAATCTATAGCGAGGTAAGAAAGCGAAACCGGCGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.236796
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0382600.1 7 20500679 T C
Osa07LNT0382600.1 7 20500884 A G
Osa07LNT0382600.1 7 20500973 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa07LNT0382600.1 DTM_#DNAt_MULE_japo_Os0037 Chr7 . 20498158 20502390 894
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0382600.1 osa-miR444a-5p Cleavage 4.5 19.436 1 21
Osa07LNT0382600.1 osa-miR1858a Translation 3.5 9.857 1 21
Osa07LNT0382600.1 osa-miR1858a Translation 5.0 24.997 1 21
Osa07LNT0382600.1 osa-miR1858b Translation 3.5 9.857 1 21
Osa07LNT0382600.1 osa-miR1858b Translation 5.0 24.997 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0382600.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0382600.1 7 sp2(t) Morphological trait Panicle/flower nan nan
Osa07LNT0382600.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0382600.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
Osa07LNT0382600.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0382600.1 7 Ra7a Others Others RG650 C285
Osa07LNT0382600.1 7 Ph7a Morphological trait Dwarf RG650 C285
Osa07LNT0382600.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0382600.1 7 dth7.1 Physiological trait Flowering RM125 RM336
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus