>Osa07LNT0387300.1

GGTAATAGAGGTTGAGTCCCTAAAAAAAGTTGTATCAAGTTACATGGTTTGTTTGACTGTCTATTTTGGTTTACAAGCAGCAACGAATAACCAATCAAAACTCGGGGCAAGAAAACAGCTTTCTTTGGTTTACTTTTCCTTACTGAAAATGCTATTACAACAAATGACTGAATGAACGTAAGCAATTGAGCATCACTCATATCATGTCTGCTCAGTCGATTGAGGGGGTCCGACATGCTCTTTGGCCTTTATGCATCGCGCATCTCTTTCTCCCTGCAATTGGCTGATTCTTACAAGGAGAACCATCCGAAGCTCGAGCACCACAGATTGATGGCCATCCTGAGCTTCCGGAAAACGGTACAGAGGAAGCATCGGTGACCTTTATTCCTTCATGCGCATCGCATCTTTCTCTTCCTGCCATTGGTATTGTTTCACGGCATCTGTTGTCCGTCAACGCTTCACAGATAGCTGCGACATTGCCTGTCACTCTTTTCTGACGTCCCTGGCCTTTGGATGACAGTGTGCTGGTAGGATTCTGCAATTTGATCAGCTCAAACCACATTCTTCCGGAAGGCTGATTCTCTTGGGACTGATATTTACCATGAGAAATCTCCTCCCCACTGAGCTTGTCAACTGTCATGCTTTTGACCTTTTCTTCATTCTGGAGCAAATCAATGACTCGAGATGAAACAAACTCTTCTGCTTTGCAACCATTATGCAGCTGACATTTTTTACTTCCTGAAATTACTTTGTTGGTGCAGGCAGAGTTGTCACTCTTTTTGGCTTCACAGATATCAATGACCTCAGAGGTTTCCTGTTTTCCATCTTCTATAGGAGCTTCTCCAGTTTTTATTTCTTTCGCTTCAAAGCTATACCATGGTCTTGATGATTTTTTCACTGTTGCTGGCAAAAATTTGGAGAGGAGTTCACTGGTTTGCTGTGCTTGATCTGACTCGCTTTCATTTTCAGTTAGTGGAGATATGGATTCAACAACTGGAATCTCAACTTGGCAAGAATAGCTACAAGAGGAGCCTTTAGGATTGACTGTGATTCTTCCTAGTCTTCTACCTTTGTGTAATTCACACCTCTTCCTTCCTTGTACTGGATGGTCAAGACAAGAGGAGCCATCTTCCAGCATCACTCCACAAACATCGTTAGAATCTTGTTCTGGCATAGTTCTTCGTTTTATAACATTGACTCTTTTGACTTTGTATCCTTCAGAACTTCGACGTGCTTGTTTGCCATAACTGTTACCTTCAGATGTATTTTTCCAGCGAATGCCAATTTCCTTGTCAACATTGTCACCAGAGTTAACTAGCTGAGGTCTGAAGCCAACAAATGTTCGAATTCTTGGGAGCATATTTTTCATAATGCCAGATGAGACATCAACAGACCCATTTCTGCTTATCTTTATACCTGCTTTCTCTCTGAACACTTCCTGTTTGAAGTGCCGTACTCTGCTAAGCAGAGATGATCTATTGTTGACTGCCCCTTGTTCTAACTTGATAAGTATTTCTTCACGGCGAAGACCACCGTTCTGAAGCTTGTTCCATGCGTAATCAAACACTCTAAGCAGCCGAGCCTCAGTCTTCTCAGCTTCTTGTTTGTTACCCATCAGAGCACATCGGAACACCAAGGAGTAGCCTCTGACGAAAACTTCCCTGAACAACCCATTCCCCGTCGCCCGCGTATTCGTCTCCGCTTCGCCGGCGGACGGCGGTGGGTTCCCGGCGTCCAAGTGCGATCCCGTCCGGCCGTACTGCTGGAGCCTCGCCCTGACGCTGTCGGCCTGCCCGAGGTACACGACGACGACGCCACCACCACCGGATCCATTCCACCGCCGAGCCGCCCTGATACCCTCGTCGGAGGCCCTCGCGACGCCCAGCTCGTAGAGGCCAGGGAAGTTCTCCGGCAGGTTGAGCACCCTGTACCTCTGGATCCCTTCCTTGCCGGCGGCGTGGTCCTCCCAGTCCGACGGCCCGACAAGAACCCGGGGAGTTCAACTCGACTCCACCGGATCAGATCTCGTCAGCTCTGCGCCGGTGGCGGGTTGGCAAGGGGCACCTAACCTTCCATGGGGAGAAGAGGGAGTCGTGCTTGGTGCGTGGGTAGTCCTCCCGCTTCAGCCTCGCTGGGACGGCGGCGGAGGCCGCAGGCATCGTCGATCCGGTCCGCCTGTGGCTGCGGAGTGGTGCGCTCTCAGTCTCAGCGCCGCCGGAGCCGCCGGCGCCGCTGCGGCCGC

Explanation	CPC Score
noncoding (weak)	-0.961595

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0387300.1	7	23845093	A	G
Osa07LNT0387300.1	7	23842920	A	T
Osa07LNT0387300.1	7	23843198	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0387300.1	osa-miR156l-5p	Cleavage	5.0	19.154	1	21
Osa07LNT0387300.1	osa-miR415	Cleavage	5.0	17.617	1	21
Osa07LNT0387300.1	osa-miR444d.3	Cleavage	4.5	15.533	1	21
Osa07LNT0387300.1	osa-miR1847.1	Cleavage	5.0	9.519	1	21
Osa07LNT0387300.1	osa-miR1865-3p	Cleavage	3.5	15.68	1	24
Osa07LNT0387300.1	osa-miR5488	Cleavage	5.0	22.856	1	21
Osa07LNT0387300.1	osa-miR5524	Cleavage	4.5	10.869	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0387300.1	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0387300.1	7	grb7-2	Morphological trait	Seed	RM505	RM336
Osa07LNT0387300.1	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0387300.1	7	qCDS-7	Physiological trait	Source activity	R2394	R2677
Osa07LNT0387300.1	7	qLCC-7	Physiological trait	Source activity	R2394	R2677
Osa07LNT0387300.1	7	Ra7a	Others	Others	RG650	C285
Osa07LNT0387300.1	7	Ph7a	Morphological trait	Dwarf	RG650	C285
Osa07LNT0387300.1	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0387300.1	7	nan	Others	Others	RZ395	RZ264
Osa07LNT0387300.1	7	qPH7-2	Morphological trait	Dwarf	RZ626	RG650
Osa07LNT0387300.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0387300.1	7	nan	Resistance or Tolerance	Other soil stress tolerance	C451	R1245

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus