>Osa07LNT0389900.1

GGCTCTCCAAATTTTCAGAAATATATTAAATCGTGGTGGTAGAGGAATATTGCACGAAGGCAAAGTCACAAGAAATGCTAGGAATATTGTGGTAGGATTTTACTATTACTAATCTAACTGATATCTGATGATTGATATTACATTATGACGAGACATTATGAGTTCATCGTCTCGCTACAATGAATAACTCACTCACTCACTGGCTGCGTCATAACTTTCCGCCTGTTCTTCGATAGCACAGGCTCTGTGAATTACAGAGCCAAATCTGAAGTCAAGTGCCACGATAGGAAGCTGTTCATCAAGCTGACGCTGAATTCCCCACTTTGCACTCACCATTCTTCAAACCGTCCTCCTCTGAATCATCAGCCGCAGCAATGTTTTCCTCTTCCTCCTCAAACTGATTTTCAATTTCAACGAGAACAAAATCATCGTCGTCCTGATTTGCGACGAGGACGAAATCCTCCTCCAGATCGTCGTCCTCCGACTCCGACTCCGACTCCGATCCGGCCAGCGCCGGCTCACCGCTCTCCTCGAGCAACCTGGCGACATCAGGATCGATGGCATTCTCGATCCGCGTCACCTCCACCTCCACCGCCGCCGCCGTCGCCGTGGTGGTCTCCTTACCGGAGGAGCCGATCCGAACGCGGCTCGCGTCGTAGGCCTTGACGTCCACAGGGGGGCCGAAGTGCGCGCGGGCGTGGCGGCGGACGGGGAGGAAGGCGGCGGAGGCGCCGCCGCCGCCGGTGGAGGAGATCGAGGGGCGGATCTCGCGGAGGTGGGCGAGGTAGTCGTAGCCGTCGTCGGGCAGGCCGAGCTCCAGGATCTCGCGGCGGACGTGGTCGGGGAGGGGGCCCGTCTCGCCGGAGGCGGAGGAGGAAGGCGCGTCATCATCTCCCTCTCCCACCGCCGCGGCGGCGGCGCCGCCGAGAACGTCGTCGTCGGCGAAGCCCGGGACGTAGTAGGGGTTGTTGTCGACGCGGAAGAAGACGCGGTCGGAGGCGTCGGCGGCGCCGGGGCGCGGGCAGAGGCGGAACGTGGCGAAGTTGCGCGGCTTCCGGCTGCGTCCCCGGCCCATGGCGGCGGCGGCGGCGGCGAGATGAGATTGAGTGGTGGTGGCGGCGGTTGCTTGGTGGGGAAGAAGTGGG

Explanation	CPC Score
noncoding (weak)	-0.394453

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0389900.1	7	26326006	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0389900.1	osa-miR390-3p	Cleavage	4.5	23.847	1	20
Osa07LNT0389900.1	osa-miR1846d-5p	Cleavage	4.5	20.402	1	22
Osa07LNT0389900.1	osa-miR1847.1	Translation	5.0	19.109	1	21
Osa07LNT0389900.1	osa-miR1428e-5p	Translation	4.0	21.784	1	22
Osa07LNT0389900.1	osa-miR1858a	Cleavage	4.0	11.309	1	21
Osa07LNT0389900.1	osa-miR1858b	Cleavage	4.0	11.309	1	21
Osa07LNT0389900.1	osa-miR1428f-5p	Translation	4.0	21.784	1	22
Osa07LNT0389900.1	osa-miR1428g-5p	Translation	4.0	21.784	1	22
Osa07LNT0389900.1	osa-miR2870	Cleavage	4.5	10.137	1	21
Osa07LNT0389900.1	osa-miR2876-5p	Translation	5.0	23.388	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0389900.1	7	nan	Physiological trait	Eating quality	CDO497	BCD855
Osa07LNT0389900.1	7	qPLLN7	Physiological trait	Sterility	RM234	RM172
Osa07LNT0389900.1	7	nan	Resistance or Tolerance	Other soil stress tolerance	R1245	R1789
Osa07LNT0389900.1	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0389900.1	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0389900.1	7	nan	Physiological trait	Eating quality	R1245	R1789
Osa07LNT0389900.1	7	hd7a	Physiological trait	Flowering	RM18	R1789

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus