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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0392900.1

GTAGCACATATAAAATTGAAATTCTAATAAGTCTTAGAACAGATACGATTGAAATAGACCCACGTGCGGATCATTTCAGTGAAAGCATTTCTTGATATTTTTTAACATAACTTGTCTCTTACTTCCAACCGAATCAATTCTTCCTGTCCATCAATCCCCTACTCATCAAGTTGAAGATAATGCCCTGGTATTTCATTGTTCAGCAATCCTCTTTAGCATTTCCTCGATTGTTATGTTTTCATCTCCAGGTTGAAGCCACTGTCTTAAAGCCGCATGTATGGTTCGGACAGAAATAGCAGTCTTGACAGTCCCACCAAGTGCTCCACTGTTCACTCCAACCACCTTGTTTACTCTTTGTAAGAAAACAGGTGCCCCTGATGTGCCACTCTCGGATGTATAGTCCGATCTAATTTCTCCACTGTCAGTTTCTTCATCCCAAACTGGTTCGGAGAGTATCTTTCCGGGAAATGTTCCTGGCTCTACAAGAACTTGGCCATACTTCATTGTGAAGAATGCGAGTAAAACAACATCAATCCCAGAAACAACATCTCCATCTTCCCAGAATCTCAAAGGAGTACAAGGAACACTAAAAGTATCAGCGCGGAGCAAGGCTAGATCTCTGCCTGCGTCGACATAGACGACTCGAGCATCAAACCTTACACCAGTGTGAAAACCCACCACCACCACGGCCACGGTACCATTGCTCTCGGTCTTGGGCAAATTATGTTCACAGGTCAGTATGAGGCCTGTGTTGCCACTGCCGAAGACAACAAAACCATTCCCGCGGAACTGCTGTGCACAGTCCAAGCGTACCATAGAATCTTTGAAATTATCAAACACAACTCCGCACCAATGAGATATCGTATTATTGGCCATTAATTATGGTAACCTTGTGGCGTTGATCGAGTCGAGCAGCTGCTGTGCTGAGGAAGGGGATTCATCCACCACGAAGATATGATGGAGAAGAGGGGAGGTGATGAGGTCACGCGGTCAAAAGTAAAAAGCATTGTTTGGCAGGGCATGAAAACCAGGAGGATGAGGAGGAGAGGTGCCATTGCC

Coding Potentia
Explanation CPC Score
noncoding -1.22543
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0392900.1 7 28141172 A C
Osa07LNT0392900.1 7 28141794 A G
Osa07LNT0392900.1 7 28142051 A T
Osa07LNT0392900.1 7 28142545 G A
Osa07LNT0392900.1 7 28142979 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0392900.1 osa-miR395a Cleavage 4.5 15.967 1 21
Osa07LNT0392900.1 osa-miR395v Cleavage 4.5 15.967 1 21
Osa07LNT0392900.1 osa-miR2870 Cleavage 5.0 13.621 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0392900.1 7 S23(t) Physiological trait Sterility R1789 C213
Osa07LNT0392900.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0392900.1 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0392900.1 7 qDTH-7 Physiological trait Flowering S10832 RM1306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus