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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0394300.1

GGTTGCAGATCGATCGGAAGCTCAAACGCACGCTAGCTACTGCAGGCACACCAAGCTGACGAACGACAACATGAGCACCACCGGAAGGGCTCTCCTCGTCGCTCTCGCCGCCGTTCTTCTCGTCACCGGCGACGCACTCCTCGCTCCCGCCGGTGGCCAGGAGCAGTACACCAAGGCGCCGGCGGAAGCGCACAAAGGCTACAGCATCGTGCCTGGATTTCAGGCCCCATGTAAAGGCTGGCTGGACCATCATGCCCATCTTCTTCTTCACTTGTGTCATTCTCCCTACCATTTCTCCATGTTTATCTGTAGGTGTCGGCAGGTTTGGCCAGCTTGCTCTCTCTAACTTCATCTGCAAATTAAAACCCAGCACCTTGATAGCGATCCACGCGTTTACTAAAGGATCGTTGAAAGACACCTCTTTCATCTGCGCTGCTCTTAATTCATGCTGTTGTATATTCATTCTGAAAAATGTTGTGTTGCTGTGCTGTAGTCAGTAACAGACTAACAGTAACACGCCTCATGCACATTCAATTTTGGAGAGGTCAAGTTGTAACATAAAGAATGAATTCTCAGGATCAGATTTCAGAAGACAGTGAATGAGAGAGAGAGATTTTGCACCATGTTTATGCCTGATGCTTTGATTGACAACAAAAGCAAGTCAACTGTATTAGCAACTTGCAAGCGTGGAGAGTAGTACTAGTATATCGAATGCTGCTGGGTCGACCATGTTTCCGGTAGCAGTGGCAATGATTGGCCCAAGTATTCTAGAGAGTTTTATTCAGTTATCGACATCTCCTCCCCAATCCTTTGATCTGATACACCACGTTGTACGCAATGTTTGCCAACTTATTTAATCCAGTTTGATAGTTCTATTTCAGGTCGTTATCGCTGTTAGTTTATTTTGCTTCTTTCTTCAAGTCTCCAATAGGAGGGATCACTACATTTGCAAATGCCGACTGAATTTTTTGAAAGATCGCCGACTGAATTTATTAACTTTTTTTTTTCTGAAGGTCAGTAAACTTGGTGTGACAATTTCTTGCCAAATTTCGGCACAAAAACAAGATGATTCATACTAGTACTAAGAAAACAAGATGACTTGCTTTAACTTTGTGAAGCACATGCCATCTCTCCAAAACCCAAAGTGAACAGGTTCTCTGAACAACGAACAGGTAGCAGAATAGCTCGCGGTGTTGCATGTGTAGGATGTCGCACGCAGCAGCAAAGTTTTACAAGAGTTGCAGATAATTGACGATGACAAGGATGTGCTCCCTCCTCATCAGGCAAGGATCTCCTTGGATCATCTCGAATCTAGATAGATACTCAGGAAGATCTCAGGAGCAAATCTCGTCGTCAATGGTGTTCAGTTCACTGAACAGGGCTGTAGAAACCTGCAATGATCTGAACATTGGAGTTCCAAGTCATTGCTTGGACTTGTGTGCAATCATTTGTCCATGTTCAGATCACTTTGGGCGATGGTCTTTCTGAATGACTTCAGAAATCTAACTCTATATCACTTATATAGCATGAAACATATGCGTAGTTTGCTTAGAATTTTTTTTGTC

Coding Potentia
Explanation CPC Score
noncoding -1.07783
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0394300.1 7 29112557 T G
Osa07LNT0394300.1 7 29112919 T C
Osa07LNT0394300.1 7 29114209 G C
Osa07LNT0394300.1 7 29116598 T C
Osa07LNT0394300.1 7 29116992 C T
Osa07LNT0394300.1 7 29117014 C G
Osa07LNT0394300.1 7 29117797 T C
Osa07LNT0394300.1 7 29119156 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0394300.1 osa-miR5810 Cleavage 5.0 22.892 1 24
Osa07LNT0394300.1 osa-miR5819 Cleavage 3.5 22.938 1 21
Osa07LNT0394300.1 osa-miR160e-3p Translation 5.0 21.193 1 21
Osa07LNT0394300.1 osa-miR1866-3p Translation 4.5 20.665 1 22
Osa07LNT0394300.1 osa-miR2867-5p Translation 4.0 22.813 1 22
Osa07LNT0394300.1 osa-miR5073 Cleavage 4.5 18.06 1 23
Osa07LNT0394300.1 osa-miR5076 Cleavage 4.0 15.633 1 22
Osa07LNT0394300.1 osa-miR5497 Translation 5.0 19.844 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0394300.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0394300.1 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0394300.1 7 qDTH-7 Physiological trait Flowering S10832 RM1306
Osa07LNT0394300.1 7 S23(t) Physiological trait Sterility R1789 C213
Osa07LNT0394300.1 7 nan Resistance or Tolerance Drought tolerance RZ978 RG351
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus