\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0394800.1

TCTGTTGATTGATGGATTTATCTCTCCCTGTATATGTGAGCTTTGGCGTCTACAGCAACTATGGGAGGAAAATGAATGTATGCTGTTACTAGAAGAACCAGTAGTACTAATGATAGTGAGGATGGACGGATGTGAAAGGTAAAGTAATAACTTCTGTTGTGGTGATGGAGATGGATGCACCATTATAAACAAGCGAGGCTGGGTGGCTATGACGTTACATAGTTATGGATCTTGTTTTATAGTTGATCATGTATATTAACGGCTAATCAGTTGATTTTAATATGAAAAGTAGAGAGGGGGGTGATCAAGTGGAGCATGGGATAACTACTGGGTGATGCATTAGTTCAGCTAAGTTGAGCGGGGCACGTTTGGAATGACTTGGCACATGCTTGCTTGCTAACTTATGTAATTCGTGGGTATCCTCATAGTTAAGCTATGTTTCACTTGAGGTATGCCTGCAGGTAAGGTAATTTCTGCTAGCTTTCTTGTAAAGATGGGAAGGTATGTAGCTAGGGCTGAGTTTGGGAACTCCAAGCCTCTTTTAGTAAATAGTAGAGAGATATTTATTTAATTCCTGAAAAATTGTGTGAAGTGAGAGTTACTAGTAGTGCCTGCAGGTGATATATGGCATAAGTAACCCAACAGGTGACAAGTAACCCCCGTTATTCTTGTAATGTATTATGCTCTTCCAATGCAATTTGTTGCTTCATCTTGGGCCCCCTGTGTACTCATCCTTGGTAGAAAAACAGAGCTTACAAACTTGGGAGTTCAAAATAGCCAAAAAAAAACTTAGCTAGCTAGGTGAAAGTAATGCTTAATTAATATTTTTTGTGTATTGTCCTCTTGCAAAGTTGATGTGCACAGGCAACTGCATCAGATCTATAACATACCCTACCATATTACAGTGAAACGGAGGAGATCTCAGGGAATGGCTGAAGTTGCATTGGACCAATCTTGGTCCGACAAGCCTCCAAGACAAACTTGGATTCAATTTCGTTCTGGCAGATCGGTATGAATGCCATCCTCGCAAGCATTGCGCAAGTTGATAGTGGTGATATTCTTGAAAAGAAAAAATCGATAGTGGTAATGAGAAAAGCACAGGAGGAGGACAAGAGGACAAGTGAGGCGGCAAGCTAAGAAGACGGTGGCTTGGCGTGCTTGGCGTAATCTAACTTGATTACCAGGCAGAGGCAGACAAACACTGGATTCTAGCTCGATGGAAGATGTTCCTGCCACATGTGCATGCATTCATGCTGGCTTAAGGAAATTATTCAGGGAGACATGATGCCCAAGCAAGAAGATCGAGGGCAGGGCTGCTCCAGATGAGATCATCAGCCGCAGCTACACCTCTACCTCTGCTTCTTGTTTTCCTCTACCTGTAGGCTGTAGCAACAACAAGTTTTCCTCTACCCCTCTGCTTCTTGTTTAGCAACAACAATAGTACTACTGCTCTGCTTCCTGTGTGTCATCTGCATCAATGATCTGTGATGATCTATTGGATGTATCTCAGTATCTGTGCTTATAGCTTTCCACCATCGAATCGAACATGCACGACTCATTTTCTGGTATTTCTCAGTCAAATTTCTTTAAATTTGATCAAATTTATAAAAGAAAAACATAGCAATATTTTCA

Coding Potentia
Explanation CPC Score
noncoding -1.18693
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0394800.1 8 24136 G A
Osa08LNT0394800.1 8 24291 G A
Osa08LNT0394800.1 8 24602 G C
Osa08LNT0394800.1 8 24821 T G
Osa08LNT0394800.1 8 25020 G C
Osa08LNT0394800.1 8 25221 A G
Osa08LNT0394800.1 8 25258 G A
Osa08LNT0394800.1 8 25313 C G
Osa08LNT0394800.1 8 24422 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0394800.1 osa-miR172b Translation 4.5 13.043 1 21
Osa08LNT0394800.1 osa-miR166i-5p Translation 5.0 22.494 1 21
Osa08LNT0394800.1 osa-miR437 Cleavage 2.5 11.678 1 21
Osa08LNT0394800.1 osa-miR535-3p Translation 4.5 10.449 1 21
Osa08LNT0394800.1 osa-miR1428a-3p Cleavage 4.5 16.451 1 21
Osa08LNT0394800.1 osa-miR5485 Translation 5.0 14.201 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus