>Osa08LNT0405800.2

CAAAAGAAAACCTTTTTTTTGTTTCAATCAACACAGCTATAAAATATATCAAAACTATAGATCATATTTGGGTGTTATAAGATCTATAACCTCCATGCCTATTTGGTGGTCAATGGACATTTCTCCCTCCCTCCTATGTGCTTCAGATAGTAACCTCCCCTAGCTTATAACAGGGAGTTGTTCTCCCCAATATTTACATATCTACCATACAAAGAATTTATCTCCCCCCAGTTCCCTCTCTACATGCCATCAATGGCGATCGTTACCGCCACCGGTAGCCCTTCCCTGCCCCCTCCCCACCTTGGCAATGCCTTGGCTGCAACTGCTGTAAGACGAATGATAGAGCGCCCGCTATCATGTTTCACATTGTGCCACAATCGCTCAATGCTCGGCTTGAGCACTTTCTCGGCCCAGTCCTCAATCTTCTCGTCGGTAAGCCAGACACTGCCAACCATCCAATCGACGGCATCTTCATCAATCCTGAATGAGCTGCTGCTCCCCATGACCGATTCAAATTTCGCCGATATGCAATCTGTAACCGTCTTCCTGAATGGCGTGAAGTCAACAGGTCGGAACACAATGGCATCATCGACAAGTTCCAATATATCAGAGCCAGGGGCCGGTGTTGATCGCTTGACTGCAAGCTGCCCTTTCTCCTGCTCTTGTTCCACCGAGACATCACTGGAATTATGTGAGCCCTCAGTGTCATCCAAGGCGCCGACTGCCAAATTGAGGTCAAGTGACAGACCGTGACTACTGGACAGTTCTTTTGCTAACTTTGCAGGGCGAACATCATCGCATAGCCAATCTGCTCGGTGCTTGACCTGTTTGTCACCAATCGAGAGCTCTAGTTGCCAACTCGAACTTGTTGACTCCAACATCCTCTCTTCACCTCGTAGCAGAGTCTCAACGTTTGATCCCTTGAGCTCCTCGGGTACCCAGTTTGTGGTGAGCACAAATATGACATTACCAAGGCTGACCTCACGCCCACGGGAGTCTGGTAGGCGACCGGTCTCCATTGCCCGTTTGATCTTTCCATGCACAACAACGTCCACTTGATCGATGCCCTCCAGAACAATCACCGAGAATGGGTTCTGCCGAACTGCCTCAGTGACCCGGTCGAGTGCAGTTTTTCCCCAGAAACCCATGTTAGGACCATCATTGCCGACCCTGCCCAACCGGGAGTCACCACCAAAGTTCACGACGACTGGTCTGGTGTTTGCCATCAGCTCAGACAATGCGTTCACCATCTTCCTCTTACCAGCTTGATCAGGGCCAACAAACAGGAGCCACATGTCACCCCTTGTCCCAACGTTCCGCCGCTTCCCGCTGCCAGATCTGCATTGTATTACAACAGCAGCAATGGCTGAAGCGGCATCTGACTGCCAGCTGACCTTCTCTGTAAGCCCCTTGAGGAGCCTCTTGAAGGATTCAATATCAGAAATTCCAGCAATCTTGGCCTTTTGTAGAGCCGTTAGTCCTTCACAACTTTCCTTCTGCTCATTCTCCACAGCAGGATTCGTGCCCGGGTCCAAGCGACAGAGCACAAGGTCAGTTTTCACTGGGCTGGCAGGAGGGCTCTTACGGAGCTCAAGGGTCGGCGCAACCGAGGGCTTCTCCCAACTGGGATTCATCTTAAGAGTGGGGACAGCGGCACCCCTTGCGACCCCCAATTTGGGCTCGACGGGTGGGCGTGGCGTGAATGTGGCAAGAGGCACGGAGAGCGCCGGTGCCATGGGACAGGCGGAGTGGATTCGGGCACACGTCTCGCGCCATTTCCTCTCAAGCTCATCTTTGCTCCTCTTAAGTTTCAGCTCTTGCTCCTTGGCCTTATTTTGATCATTGCTGAGCTGCAGCCAGTGTGGCAATCCAGGCTTGGCAGCCTCAGGGCGGGACGCCGGCTTATCCGTCTGCTCGGCCTCAAGCTTAGCGAGCTCGCGCTCATAGCTACCCTTGCAAAGCAAGCACATGGCCGGCTTTGCTGCCGGAGACTGGTCGCTCCCCGGAGGCGGCCACCGGAGCGCCGTTGGTGTCACTGGCATAGGCCGAAGTGCAGGTGATAGCATCCCCATCGAGCTGTTGAGAATTCCACTGCCTCCAGGCCGGAGAGCTGAGCCGGCGGCGGCGGCGGCGATCGGCGCGCCGCCGCGGGCGATGGGCACGGCGTGGAGGTCCCACTCCGCCTCCATCCCCGGGTGGTAGACCTTGCAGCGGAGGTAGGTGGTGCACGCCGCCGTGCAGACGGCCCACACGCCGGCGCGCCCGAATCGACGGAGAAGGCGCCCCATCTCCGCCACCGCGGCCTTGCCCCCTTCCGACGCCGCCGCCGCGGGCCCGTCGACGAGCCACTTGAGGTCGCCGAGGTCAAGGACCACGCCGCCGTGCTCGCCGAGGAGCCTCTCGACCACCGCGCCCAGGTCCCCGATCCTCGCCGCCATCGCCGCCTTGTCGCCGGCGAGCTTGGCGAGCTCCGCCTCCAGAGGAAGAACCTTCGCGCCGGCGAGGGCCGGGAAGCCGGCCGTCGGGATCCTCCGGATTGCCTCCTTGAGCACCGCGTCCGGGCCGGCGTCGCCGACGAGCACCGGGTTGCGGCGCGTCGGCTTGAGCATGACGTCGATCACCTTGCGCGCATCGTCGCCACCGCCGCCGCCGCCGCCGCTGGCGACGGCGGCGGCGGCTGCGAGGCGAGGGTTGAGGTATGCGTTGGCCGCGCCGGCGCGCGGGAGTGGGGATGGCGACGGGGAGAGCGGGCCGGGCCCGGCCGTCGTGGTGGAGGCCGCGGCGGAGGGGCACGGCGAGGGGGCGGAGAGCGACTGCTCGATGATGGACTTGACGGCGGCGGAGGAGAAGGACGCCTCCCGCATGACGCGGCTGACGGAGGGGTCGTCGAGGATGGACAGCACGAGCTGCTCGAGCTCCACCTTGACGGCGAGGAGCGGCTGCTGTATGGTGCTAAGATCCGCCCTCATCTTGATCTTCCCCAACTCATCAATCGATCAAACACCACCCCTCCACCCAAAATTCACACCACCCTCGCCGCCGCCAAGAACCCAACCCAACCCCACCCAAGAAGAGGCAGCAAAGGGGATGGAGAGGCGGAGGCAACGAGACGAAGACGACGACGAGGAGGAGTCGAGGAGTAGTAGCACTAGTAGTAGTAGTAGTACACCACTTCACCGCAAGGGAAGGGAAGGAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGAAATGCGAATAGAATCTTCGTCTTCGCGCAGCCCTGCGTTGTTTGTTG

Explanation	CPC Score
noncoding (weak)	-0.151313

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0405800.2	8	9225121	G	A
Osa08LNT0405800.2	8	9225541	A	G
Osa08LNT0405800.2	8	9225577	A	G
Osa08LNT0405800.2	8	9225616	A	G
Osa08LNT0405800.2	8	9226067	T	C
Osa08LNT0405800.2	8	9226863	A	G
Osa08LNT0405800.2	8	9228119	C	T
Osa08LNT0405800.2	8	9228300	C	T
Osa08LNT0405800.2	8	9228363	A	G
Osa08LNT0405800.2	8	9225973	T	C
Osa08LNT0405800.2	8	9225458	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0405800.2	osa-miR5796	Cleavage	4.0	14.107	1	21
Osa08LNT0405800.2	osa-miR1425-3p	Translation	3.5	14.108	1	21
Osa08LNT0405800.2	osa-miR1879	Cleavage	3.5	11.587	1	24
Osa08LNT0405800.2	osa-miR1879	Translation	4.0	7.519	1	24
Osa08LNT0405800.2	osa-miR2097-5p	Cleavage	4.5	21.851	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0405800.2	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404
Osa08LNT0405800.2	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0405800.2	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0405800.2	8	nan	Resistance or Tolerance	Drought tolerance	RM72	RM331
Osa08LNT0405800.2	8	hsa2(t)	Physiological trait	Sterility	nan	nan
Osa08LNT0405800.2	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus