\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0410900.2

CAGTATAGATCTTACTCACACAGATGGCTTTATAATCAACATTGCTTATTCGAAGGATCATTTACGTATTTTCTTAACCTCACCAGTACATACAAATAGAAAGATCAGGATCGACATTGGCAAGATATACATACGTACAAATAGAATTTGTGCCACACATTTCAAAATAAAACAGATCAGTAAGATCCATGTTCTCGACATTTACCATTGAACCTCACCTCCTGAAACGAAGAAAACCAACAAGAAAAATCAGCACAATATATGTTGCACCTCCGTCATACTCTTGCCTCGATTTTGAAGGAATCAACGACTGTATGTAGCCTATCCTTGATTTTCTCCCATCTCCTTTCGTTTGCTCCAGTTGTCAGCGTGTAAAATTTGCCATTTGCAATGGCAATTGCACCAAGCGCATGTCTCGTGAAATTTGGAGCTTGAGCTGTGAACTCAAAAGTGTAGTAAGTTCGTCCATCAACATCATTCTCTTTTGCTTCAATTAACTTTGTCTTTTGCGTAGGTGCGGCCAAAACCTTACGTATAAGAGCTTCAGCAACCTGATCTGGAGGACCAAGCTCACGGATGTCTTGCTTGCTGGTTGGAATTGTGTTGACACTCACACTTTCCAAAGGCTCTATGACATCTTTGTACACCTTATCTTGCCCTTGAACAACCACTTCCTGCCATCCAAATGGGTAGAGGAAGGAGTATCCATCCTTCTTGTCGGTGACAGGCAAGAAACCCTTCTTAGCCTCTGCTGCGTCTATACCACATCAGAATGGCACTCAGGCACATGGTTTTCGACCAAACAAACCATTCACAAGTCTGAGTGATGCTGCCGGATTAGGCCAAGAGAGAAACATGGCAGCGCCTGCAGCGAGCAACATCCTCCGCCTAGATCTCTCCTCCGCTTCTCTCTTGATGCTGGCTCCTTCTGCATCATCGCCGGCGGAGAGAACGTGGGCGGGAATGAGGCCTTGGAAGGAGCGGCGGCCAGCGGCTACCGAGCGGTCGCCGCCACCCACCTCGGACAGCCGGTGCCGCTCGGCGAGGGCGAGAGCGAGAGCGAGAGCGCGCGTGCTGGAGGAGGCGCGGGGGAAGCACGCGGCGGCGGCGGCGGCGAGGGGGAAGGCGGAGGAGGCCGGCGCGGGGGTGGAGGTCGAGGGTGCGGCCATCGTGGCTGGGGTTCACCGGAAACGGGAGCGATAGGGGTTTGGATAAGGATATCTGTCGGTTTTCGAGTTTCGACGAGAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.812348
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0410900.2 8 15768915 G C
Osa08LNT0410900.2 8 15769086 A G
Osa08LNT0410900.2 8 15769876 A G
Osa08LNT0410900.2 8 15770880 T G
Osa08LNT0410900.2 8 15771412 A T
Osa08LNT0410900.2 8 15772186 C T
Osa08LNT0410900.2 8 15772250 G C
Osa08LNT0410900.2 8 15772306 A G
Osa08LNT0410900.2 8 15772973 G A
Osa08LNT0410900.2 8 15770142 T C
Osa08LNT0410900.2 8 15772605 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0410900.2 osa-miR528-3p Translation 4.0 20.197 1 21
Osa08LNT0410900.2 osa-miR5485 Translation 4.5 15.806 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0410900.2 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0410900.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0410900.2 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0410900.2 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus