\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0411100.2

ATGAGATACACGCACCGCGTTACATTGTATGATAGTAAAGCATACATGGATATTGTATATGTATACAGATAATATGTATATAGAACAACATCTGTATATAGAACAGATCGATATTGTATACGATAGTAACGCATACATGAATATTCTATATGTATACAGATAACGCATGCATGGATATTGTATATTTATTCTAGCGCACCCGCAACAGCGGCCATGTGCTTGTATATATGTATTTATACGCTCGCACGTACCTAAGTACGTACGCTATACATATGCAATCTGAGATCGCTGCGCCACACATTATGTACGGTTGGATTAATACATTTATTGTAATATATCTGTCTGATACCGCCATCTGTCTGATGATCACTTCCATGCGTACCGCTTCCTCACGCGCTATTTGCGTGGTGGCGGGAATTAGACACGCTTATCTTGATCCCTGGGATCACCCCATATTGCTCCGCGTGCCCGTGGCGCTGAAGTGTCAAAGTGCAAGTATATACAAATTACAAATCATTAGTCTAGATATATATGTATGTCTGATCTGTTGGTTTGCAGTACTCATGCACGGTGGCCTGAACCCCTATCCCGTGGCTGTCCTTCAGTACTGTTTGGCTGCTTCACATTACCCCAATCGGGAGCCCCTTGTGTAATGGGAGCGCCTTGAGTCCTGGGATCTCCCCGGATTAAACCCGCTGCCGGTTCTCTGCTGATGGGCTGATGCAGTAAAGACGGCCCACCATATCCTTGTGCGCCTTGAGCCCTGGGATCTCCCCGTATTAAACCCGCTGCGGGTTCTCTGCTGATGGGCTGATGCACTGAAGACGGCCCACTATATCCTTGCAAGCTGGCAGGCGAGCCTTGTGTCCTGGGATCACCCCATTTCATCCCTCCTGTGGCTTGATTGTTTTCTTCGGTGCCAGCATGTGGAGAACCAAGCGACCAGTAGCGTGATCCCATGCCTGTAGTTACTTAGCAATTAGCTAGCTTCGTTAGCGACAAGATCATGAGCTTGCAGTGGAGAGATCTAGCTTTTATGACCAGTACCGCACTCCATCT

Coding Potentia
Explanation CPC Score
noncoding -1.32399
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0411100.2 8 15988726 T G
Osa08LNT0411100.2 8 15984202 T G
Osa08LNT0411100.2 8 15984589 A G
Osa08LNT0411100.2 8 15985017 C G
Osa08LNT0411100.2 8 15985661 G T
Osa08LNT0411100.2 8 15985720 T C
Osa08LNT0411100.2 8 15986332 T C
Osa08LNT0411100.2 8 15986565 A G
Osa08LNT0411100.2 8 15986611 T G
Osa08LNT0411100.2 8 15986801 A G
Osa08LNT0411100.2 8 15986953 A T
Osa08LNT0411100.2 8 15986959 A C
Osa08LNT0411100.2 8 15987572 C G
Osa08LNT0411100.2 8 15987814 T C
Osa08LNT0411100.2 8 15988102 C A
Osa08LNT0411100.2 8 15988313 C G
Osa08LNT0411100.2 8 15988539 G C
Osa08LNT0411100.2 8 15988892 T C
Osa08LNT0411100.2 8 15988979 A G
Osa08LNT0411100.2 8 15989159 T C
Osa08LNT0411100.2 8 15989546 C A
Osa08LNT0411100.2 8 15989807 C A
Osa08LNT0411100.2 8 15990674 C T
Osa08LNT0411100.2 8 15990911 T G
Osa08LNT0411100.2 8 15991041 C T
Osa08LNT0411100.2 8 15991304 T C
Osa08LNT0411100.2 8 15991345 C T
Osa08LNT0411100.2 8 15991375 T G
Osa08LNT0411100.2 8 15991392 G C
Osa08LNT0411100.2 8 15986784 T C
Osa08LNT0411100.2 8 15991561 G C
Osa08LNT0411100.2 8 15991645 G A
Osa08LNT0411100.2 8 15986341 T C
Osa08LNT0411100.2 8 15986737 A G
Osa08LNT0411100.2 8 15990675 G T
Osa08LNT0411100.2 8 15986798 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0411100.2 osa-miR5837.2 Cleavage 4.0 19.989 1 21
Osa08LNT0411100.2 osa-miR1849 Translation 4.5 17.168 1 21
Osa08LNT0411100.2 osa-miR1869 Cleavage 5.0 18.56 1 24
Osa08LNT0411100.2 osa-miR2879 Cleavage 3.5 13.451 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0411100.2 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0411100.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0411100.2 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0411100.2 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus