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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0412300.1

ACATGCCATATGTATTTCAAATAAAAGAAATACATTGTACAGATTACATAGCGATCTGAGTTTCCTTGCAATTTGACCAAAAATGCGGTCCAAACTTACAGCATATGGACTACAATCCTTGCATACTCCTAAGAGTATACAGACTACATTGTATGGATTAACAGCGAAGGCTACATTCATCAAACTACAATCCTTTTAGCACCATCCACTTCTGCCTGCTGTATTTACCATCCTTTTAGGCAATCAATTTTTCTCTTTTGTATTTTGCACAAGGTTACAATAGTTCTCAGGATAACTTGACATCTGGCAAAACTAGTTCTCAGGATACAAGGTGTTCTGAATCTTTACAAACTCCTAATAGTGTATATACTACATAGTAGGAATTACAAAGAAAGGCTACATTCATTATCTTGTCATTGATTGTTCTATGTCATTTCTTCAGCATCCTCTCATTCATGCTCTTCCAATCTTCAATTGCCATTCATGCCGCACCCCATATATCTCACCTGCAATTCTGCATTGGCCTCCTGCACAAAAGCGGAAGTTGCCAGCTGCCAAGTGTGCCAAGAACATGTATCTGATTTTTGCAACTGATTGTGATGTCATGTAGTGCATATAAAAGAAAAAAGAGGGAAACCAAATGTGGTTCAGTTCAGATTTGGCTCTGTCTTGTAGTGACAGAAAAAGAGAAGCCACCAGGTGGTTCAGTTCAGATTTGTCAGGAGGAAGCCAAAGCCTTATGTTTCTCTAGTTGTTTCAACTATTTTCAGTGGAAGTGTCACAGCTGAATATACAACATGCAACATATCTTACTCCTCCACTATGCAATTTATTCAGTGTGATACTCAAGTTTCAGATTTTCCTAGTCAATTTTGATGTGAGCCTACTACCCCACTTAGCAAAATGTCCAACAATTTTACTGATATGATGATTGGTCGGCCAGGCACCGAGCGAGTTGCCAAGACAGAATGTCTGTTTTGTTTATGCAAAACAAAATCCGATTGTCTCAAACTAGTACTAATTAACACTATCAAGCTGCAATGATATATGCTAGGCTTACTACCTAATCACATGAAAACCAAAACTGAGCAATCAAACCAGAATCTAGTGACCATGATTAATTACCGCAATGAAAACCAAAACCGAGCAATCAAACTATGAAACTCAATGCACGGGAGGGTGTCGCCTGGCCCTTCCACTGTCGCTGCCCTGCTCCAGGCATGGGAGGGCGCCGCCACTGCCCTGCTCCAGGCACGGGAGGGCGCCGCCACTGCCCTAGCTATCCGAGGGAGCCGCCGCCGCATTCCATCTCCATGCGCCCAACAGCGGATGAGAAAGGGGCGACGGGATAAGAAACAGGCGGAGGGGAACGATGACTGCATCTCGGACTAGATCGAGCCGATCGGAGCGAGCGCGAGCCGAGTTGTGGTGTGTTGAGATCGCTCTTGAGCCGAGCTGAGATTTAGGTGCGATGCGGACTCGCTTGTGTGGGCCGGCCGTCGGATGAGCGCCCCATCCACGCGTCATGCATCCGCGTCGGGGCTGCACGGACTGCTGTTTGCATCCGGTCTGCACCAGATTTTTTTCCGGACCGGCTGGCCTCGATCTGGAGGGCAAAGGTGCGCCGGCTGACTGCTTGCTGCTTGATATTTGCTTGTTGGATTTGGATGACTGGATCTATTTGCTGCGCTTGATGATGGCGTGCTGATGTTGTTGCTTGGACCTGAAGAGGGATGATGAATGACGAGGTAGAGGCTAGGCAGTAGGCTGTTGTTGCTCTCAGGCTGCTGCATCCATGACGATGGGCTTATGCTGCTGCTTGATGATTGACCCAAAATTGCTGCTCCTGCTTGATGCTCAGATCGACGAGGCCGCCCCTGGGAAGCAAGATTTTCCCTCCCAGGGGCAGCGTGGCTGAGAACGTAGATGGAGATTGGATCAAGCAACCCAGTGCTCTGATACCATGTTAACTTTAGTGGAAGAGAAGAAATGGGGATTGAAC

Coding Potentia
Explanation CPC Score
noncoding -1.09875
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0412300.1 8 18466482 G T
Osa08LNT0412300.1 8 18467644 G T
Osa08LNT0412300.1 8 18467820 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0412300.1 osa-miR5526 Cleavage 4.5 19.849 1 21
Osa08LNT0412300.1 osa-miR5538 Translation 4.0 20.0 1 22
Osa08LNT0412300.1 osa-miR5789 Translation 5.0 17.885 1 21
Osa08LNT0412300.1 osa-miR416 Cleavage 4.5 18.15 1 21
Osa08LNT0412300.1 osa-miR1873 Cleavage 2.5 16.25 1 24
Osa08LNT0412300.1 osa-miR1881 Cleavage 4.0 10.893 1 24
Osa08LNT0412300.1 osa-miR5071 Cleavage 5.0 15.719 1 21
Osa08LNT0412300.1 osa-miR5509 Translation 2.5 21.235 1 21
Osa08LNT0412300.1 osa-miR1876 Translation 3.5 9.765 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0412300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0412300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0412300.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus