Transcript

Sequence

>Osa08LNT0412500.1

CTCTCTCGTCTCTCACGGGCGGTGGCGGGCAACAGGCGCGGGGCGGCCGGGAGCGGTGGTGGCTGCGCGGCCTCACACGCGCTCCCCGGCAACGGCGCCCCTCGCCCGCCTGAATCTGGAGACGGTGCCCCTCACCCGCTCGGATTTGGAGGCGACGCCCCTCTCCCGCCTGGATCCGGCGGTGGGTGGCGGCGACGCGGCAAGCGGCGGCGGGCTCGAGCCCGCTGCGGTGGCCAGTCACAGCGGAAGGTGGCGACGTCGACTACGACAACGACAGCGACCATGAGGAGGTGTGGCGGCGGGCGATGGCTATGGTTAGTTTGGATTTTATTTTTTTTGTTTTTTTTCGTGCGGGCGATATAAGCCATCCGCAGATTTTCGCGTGCGGGTGTGTCACCCGCACAAAAAAAATTAGATTTTTGCAGACACTTGGTGCAAACGGGTGGGTGATCTGCACGCAAAAATCCTTTTTGACCTTACAGAAAAATCGTTTTCATATTATTGTCATAGACCATTGCTCCGTGCTAGTTAAGCCTCTCTTGAACAGCTTGATCTCCATCTTTTGTTTAACTACATTCCAAACACATTGTTTAGTTTTCAGTATTTCAC

Coding Potentia

Explanation	CPC Score
noncoding	-1.05416

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0412500.1	8	18551346	A	G
Osa08LNT0412500.1	8	18551373	C	T
Osa08LNT0412500.1	8	18551377	A	G
Osa08LNT0412500.1	8	18551569	C	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0412500.1	8	qCRE-8	Resistance or Tolerance	Other soil stress tolerance	R727	C347
Osa08LNT0412500.1	8	nan	Resistance or Tolerance	Drought tolerance	RG978	RZ66
Osa08LNT0412500.1	8	dth8	Physiological trait	Flowering	RG333	RZ66

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus